Coturnix japonica (Japanese quail): 107323815
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Entry
107323815 CDS
T04297
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
KO
K24339
collagen type XVI alpha
Organism
cjo
Coturnix japonica (Japanese quail)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
107323815
NCBI-ProteinID:
XP_015738699
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All DBs
Position
23:complement(4372824..4391172)
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AA seq
1625 aa
AA seq
DB search
MGTMWGLWALILVGLIGACNGMEMTAEEGAPCPRLWDEDLVGNKYENVTGFNLIKRFDLL
KISSVKKVRGSRGAVLLRLGAVPLVQPTRQVFPHGLPPEFTLILTLLLKKNSTGEHWYLF
QVADRHGYPQLSLSVHGPEKSLEFQARAPGATFVSTVFTGKAVSSLFDGRWHKVVLAVQS
RAVSLHVDCGSISSKPLAPRRALSPEGNAFLGLDAVRGTPVRFDLQQAYIYCDAELARHE
GCCEISASGCQPDVPKTRRQAELMQSNNLIEISPQPQGRVFTRCFCLEEPLGPEPVREKS
SLKGDHREKGYKGMPSEECPPCPPQMAPTNVTLGPPGPKGLKGERGLPGTHGTKGEKGNR
GADCVRTDPSGPVQCAEGPRGEQGQRGERGLPGAAGADGQKGQKGEKGDGGLQGKPGRPG
RDGRPGEICVVGPKGQKGDPGLVGPEGLAGEPGPPGKPGAPGIGFPGKPGDPGGPPGPKG
EKGSSGAPGPGGSPGTPGPRGVLGPKGDKGEPCQPCPAVPMGMLSTEGLPGKPGPRGEPG
IPGKDGVSDRPGPVGPKGDRGDPGINGIKGEKGDSCLSCDPHVLAALLREPPEGRESELG
SLDKAILPGLAGIKGEKGAGGQEGPAGRPGLPGSKGDPGVRGLKGEKGEPCGQCPSAPQA
LEGAATTVAVPGAPGPQGRDGPPGRAGKPGDAGQKGQKGDMGSPGDPGLPGTDGLPGLSG
EPGIRGPAGPKGEKGDACESCPTLQGQFSDVIGIPGKPGAKGEQGEPGIGQPGRAGKPGL
PGIRGPAGLKGLQGEPGPPGIGKPGPQGEPGSTGQPGTPGPPGPQGPPGLAAEKGAKGSP
GLKGAVGPPGPPGTSITGPPGPEGQQGLPGVPGSIGMPGEKGARGEKGDPGECGCPSSPR
QDPNHSGMPGAPGLWTGTSWQPQPGPQGPPGAPGPPGPPGAPGRQGVPGHNGLPGLPGPA
GDLGPLAVMAERNIEVLKNICGDCAQLQAAFEAPISFKGEKGDQGMPGAPGNEGCARCFA
QFPRAEEARGDSPDTDCAGDPGLPGAPGVPGERGEQGLPGQRGPPGPPGPIGPPGFPGTP
GAPGLPGLQGERGPAGLAGAKGEPGPPGQPGYPGATGPPGLPGIKGERGYVGPPGEKGEP
GPPGLDGLPGATGPAGPRGERGLPGGAGEKGDQGFQGQPGFPGPPGPPGFPGKVGPAGPP
GPAAEKGSEGVRGPTGMPGPPGPPGPPGIQGPAGLEGLDGKDGKPGLRGDPGPPGPPGMM
GPPGFKGKTGHPGLPGPKGDCGKPGPPGNTGRPGAEGEPGPMGPQGRQGPPGLIGPPGSP
GQPGPAGLAGVGLKGERGSAGDRGLPGMPGQPGPPGHPGPPGEQGPDGPIGKEGPPGKPG
TAGPAGQKGEAGTPGMRGYPGEKGRAGSPGGPGKSGSMGPIGLRGPAGERGPPGSPGPAG
SPGLPGPPGMMGDVVNYDEIKRFIQQEINKMFDERMAYYTSRMHFPVEMVAAPGRPGPPG
KDGLPGRPGPPGSPGMPGQIGREGRQGVPGMRGEPGAKGEKGEKGMGLMGDSGPPGPPGP
QGPPGYGKMGPPGPVGQQGIPGIPGPPGATGPPGKTGHCSPADCMGALPMEQPIFQPKNA
KGPFG
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccatgtgggggctctgggccctcatcctggtgggcctcattggtgcctgcaat
gggatggagatgacagcagaggaaggagcaccgtgcccacggctctgggatgaggacctg
gttgggaacaaatatgagaacgtgacgggctttaacctcattaagcgcttcgacctgctg
aagatctcctctgtcaagaaagtgcgtggctctcggggcgccgtgctgctgcggctgggg
gccgtgccgctggtgcagcccacacggcaggtgttcccccatgggctgccccccgagttc
accctcatcctcaccttgctgctgaagaagaacagcaccggggagcactggtacctattc
caagtcgccgaccgtcatggctacccccagctctccctgtccgtgcatggtcctgagaag
agcctggagttccaggccagggctccgggagccacgtttgtcagcacggtctttacgggg
aaagccgtctcgtcgctgtttgacgggcggtggcacaaagtggtgctggcggtgcagagc
cgcgctgtgtccctacacgtggattgtggctccatctcctccaaacctttggctccgagg
cgggcgctgagccctgagggcaatgcgttcctggggctggatgcggtgcgcgggaccccg
gtgcggttcgacctgcagcaggcgtatatctactgcgacgcagagctggcccggcacgag
ggatgctgtgagatctcagccagcgggtgccaacccgacgtgcccaaaacgcggcgtcag
gcggagctgatgcagagcaacaacctcatcgagatctccccgcagccgcagggccgggtg
ttcacacgctgcttctgcctggaggagccgctgggcccggagccagtgagagagaagagc
agcctgaagggagatcacagggagaagggctacaaggggatgcccagcgaggagtgcccg
ccctgcccaccgcagatggctccgacaaatgtgacactcggtcccccaggtcccaagggt
ttgaagggagagcgtggcctgcccggcacccacggcaccaagggggagaaaggcaaccgt
ggtgctgactgtgtgcgcacagaccccagtggccccgtgcagtgtgccgaggggccgcgg
ggcgagcaggggcagcgtggagagcgggggctgccaggggcggctggtgctgatgggcag
aagggccagaaaggcgagaagggtgatgggggacttcagggcaagccgggccgtccgggt
cgtgatggccggcctggagagatctgtgtggtgggtcccaagggccagaagggggaccca
ggtcttgtgggacctgaggggctggcaggagagccgggaccaccagggaaaccaggagca
ccagggattggctttccagggaagccgggtgatcctggtggacccccaggtccaaaggga
gaaaagggcagctcaggagctcctggacctggcggatctcctgggacacccggaccacgc
ggtgtcctgggacccaaaggagacaagggtgagccgtgccagccgtgccctgctgtgccc
atggggatgctcagcactgaggggctccctgggaagcctggacccaggggggagcccggg
atacctggcaaggatggagtgtcggacagacccggccctgtaggacccaaaggggacagg
ggagaccccggcatcaatgggatcaaaggggagaagggagactcctgcctgtcctgtgac
ccccatgtcctcgctgcgctgctgcgggaaccccccgaggggcgtgagagtgaactggga
tcattggacaaagcaatcctccctgggctggctggaatcaagggcgagaagggagctggt
ggccaggagggacctgcaggcagaccggggctccctgggagcaagggagatccaggtgtg
cgggggctcaaaggagagaagggtgagccatgtgggcagtgtccctcagctccgcaggca
ctggaaggagcagcaacaacggtggctgtgcctggagcaccgggaccgcagggcagggat
ggtccccctggcagagcgggcaagcctggtgatgctggtcagaaagggcagaagggggac
atgggcagccctggggacccaggtttaccgggcacagatggactgccagggctgtcgggt
gagccaggaatcaggggtccggccggccccaaaggcgagaagggagacgcctgtgaatcc
tgccccacactgcagggacaattctcagacgtcatcggcatcccaggaaaacctggtgcc
aaaggggagcagggagaaccaggcataggccaaccgggcagagccgggaagccggggctg
ccggggatccgaggtcctgctgggctgaaggggctgcagggtgagccaggaccgccgggc
attggcaagccaggaccacagggagagcctgggagcactgggcagcctgggacccctgga
ccccccggaccccagggacctccaggactggcagcagagaaaggagccaagggatctcca
gggctcaaaggtgccgtgggtccccctgggccaccagggaccagcatcactgggccacca
ggccctgaagggcagcaggggctccctggggtgcctggctccattgggatgccgggagag
aagggcgcccggggtgagaagggggaccccggggaatgtggctgcccctccagcccacgc
caggaccccaaccactctgggatgccaggagctccaggactctggaccgggacatcctgg
cagccccagccgggtccccagggtccccccggtgctcctggtccccctggtcctcctggt
gccccgggtcgccagggggtcccaggacacaatggattgccagggctgcctgggccggca
ggagacctggggccattggctgtcatggctgagaggaacattgaggtgctgaagaacatc
tgtggggactgcgcccagctgcaggcggcctttgaagcacccataagcttcaagggggaa
aagggagaccagggcatgccaggagcccccggcaacgagggctgtgcacgttgctttgcc
cagttcccaagagctgaggaggctcggggtgacagcccggatacggactgtgcaggtgac
cctgggctccctggtgccccaggtgtcccgggtgagagaggcgagcagggcttaccagga
cagcggggacccccagggccacccggccccattggccccccaggctttcctggcacacct
ggcgcacccggactgcccggtctccagggggagcgaggccccgctgggctggctggagcc
aaaggggagccgggacccccaggacagcccggctaccctggtgccacgggaccccctggc
cttcctggcatcaaaggtgaacgaggctacgtgggcccacctggagagaagggggaaccg
ggcccccccggcttggatggtctccccggtgccacggggccggcgggaccgaggggtgaa
cgtgggctgccgggcggtgctggtgagaaaggtgaccagggtttccaaggccagcctggc
ttcccagggccacctggtccccccggcttcccagggaaggttggccctgctgggcctcca
ggacctgcagcagagaagggcagtgagggtgtacgggggcctacagggatgccagggccc
cccggaccccctggacctccaggcatccagggccctgctggcttggaaggactggatggc
aaggacggcaagccggggctgcggggtgaccctggcccccctggaccaccaggaatgatg
ggtcctccgggctttaagggcaaaactgggcacccggggctcccgggaccaaagggtgac
tgtggcaaacctggtcctcctgggaacactggccgtcctggggcagagggtgaacccggc
cccatgggaccccaaggccggcagggacccccaggactcattggcccccctggcagccca
gggcagccgggtcctgctggcctcgccggagtgggactgaagggtgagcgtggctcagca
ggggaccgaggtctgccaggaatgccaggacagccagggccaccaggacacccaggacca
ccgggcgagcagggaccggacggacccattggtaaagagggtcccccagggaagcctggc
actgcgggacctgctggccagaagggtgaagccgggacccctggaatgcgagggtaccct
ggggagaagggccgtgctggctcacctggggggccggggaagagcggctccatgggcccc
atagggctgcggggtcctgcaggtgagaggggtccccccggctcaccaggacctgcaggc
agccccgggctgccgggaccccccgggatgatgggtgacgtggtgaattacgacgagatc
aaaaggttcatccagcaggagattaacaagatgtttgatgagcgcatggcgtactacaca
tcacggatgcacttcccagtggagatggtggcagccccgggcaggccgggtccccctggc
aaggatgggctgcctggacggccgggacccccgggatccccagggatgccagggcagatc
ggcagagaggggcggcagggagtgccaggcatgcggggggagccgggagccaaaggagag
aaaggggagaaggggatggggctgatgggggacagtggcccaccaggacccccaggtccc
caaggcccaccaggctatgggaagatgggtcctccaggccccgtggggcagcagggcatc
cctggcatccccggtcccccgggtgccacggggccaccaggcaaaacagggcactgcagc
ccagcggactgtatgggagctctgcccatggagcagccaatcttccagcccaagaatgcc
aagggccccttcggctga
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