Coturnix japonica (Japanese quail): 107324035
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Entry
107324035 CDS
T04297
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107324035 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjo03041
]
107324035 (SNRNP40)
Spliceosome [BR:
cjo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107324035 (SNRNP40)
Complex C
U5 SnRNP specific factors
107324035 (SNRNP40)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
NBCH_WD40
ANAPC4_WD40
eIF2A
Cytochrom_D1
WDR54
WD40_like
PROPPIN
Motif
Other DBs
NCBI-GeneID:
107324035
NCBI-ProteinID:
XP_015739196
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Position
23:complement(598313..609375)
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AA seq
388 aa
AA seq
DB search
MIEQQKRKAPGGPVPGPAPGPAPAPGPGPAPGAAPGPAPGPDLPLVPSAAKRPRHDPPAA
GGGGGGGGQPPAGALVQSGPPRCSSLQAPIMLLSGHEGEVYCCKFHPGGNTLASAGFDRL
ILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKG
HTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQII
SGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAP
KERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAGS
VNELAFHPEEPIILSASSDKRLYMGEIQ
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagcagcagaagcgaaaggcgccgggcggccccgtgccaggccccgcaccgggt
ccagctccagctcccggccccggccccgctcccggcgctgcacccggccccgctccgggt
cccgatctcccgctcgtgccctcggcggccaagcggcctcgccatgacccacctgcggct
ggaggagggggcggaggcggcgggcagcccccggccggtgctttggtgcagtcgggtccc
ccgcgctgctcctcgctgcaggcgcccatcatgttgctgtcggggcacgagggagaggtg
tattgctgcaagttccaccctggaggaaacaccttggcgtctgctggctttgacaggctg
atcctgctatggaatgtctatggggactgtgataactacgccaccctgaagggacacagc
ggggcggtcatggagctgcactataacacggatggcagcatgctcttctcagcatccaca
gacaagactgtggctgtgtgggacagtgagactggagagagagtaaagaggctgaagggc
catacctcgttcgtgaattcctgctacccagcaaggcgaggacctcagcttgtctgtacg
ggcagtgatgatgggacagtgaagctgtgggatatcaggaaaaaagctgctgtccagaca
tttcagaatacttaccaagtcttggctgtaacctttaatgacaccagtgatcagatcata
tctgggggcattgacaacgatattaaggtgtgggaccttcgccagaacaagctcacgtac
acgatgagaggacatgcagactcagtgacaggcctcagtttgagttcagaaggttcttac
ctgctctctaacgcaatggataacacagttcgcatctgggatgtgcgaccgtttgcccca
aaagagagatgtgtgaagatcttccaggggaatgtgcataattttgaaaagaatcttctg
aggtgctcctggtctccagatgggagtaagatagcagggggatctgctgacaggtttgtc
tatgtgtgggacaccacatccaggaggattttgtacaagctgccgggccacgcggggtca
gtgaatgaactggctttccatccagaggaacctattattctctctgcatccagtgacaag
aggttgtacatgggggagatccagtga
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