Caldicellulosiruptor kronotskyensis: Calkro_1107
Help
Entry
Calkro_1107 CDS
T01357
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ckn
Caldicellulosiruptor kronotskyensis
Pathway
ckn03030
DNA replication
ckn03410
Base excision repair
ckn03420
Nucleotide excision repair
ckn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ckn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Calkro_1107
03410 Base excision repair
Calkro_1107
03420 Nucleotide excision repair
Calkro_1107
03430 Mismatch repair
Calkro_1107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ckn03032
]
Calkro_1107
03400 DNA repair and recombination proteins [BR:
ckn03400
]
Calkro_1107
Enzymes [BR:
ckn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Calkro_1107
DNA replication proteins [BR:
ckn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Calkro_1107
DNA repair and recombination proteins [BR:
ckn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Calkro_1107
NER (nucleotide excision repair)
GGR (global genome repair) factors
Calkro_1107
MMR (mismatch excision repair)
DNA ligase
Calkro_1107
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Calkro_1107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
RUBY_RBDX
BRCT_2
PASTA
HHH
RNA_ligase
PADR1_Zn_ribbon
RTT107_BRCT_5
HHH_8
GFRP
ILEI
Mustang
DUF719
Motif
Other DBs
NCBI-ProteinID:
ADQ45973
UniProt:
E4SCN9
LinkDB
All DBs
Position
1261199..1263220
Genome browser
AA seq
673 aa
AA seq
DB search
MSEFIKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPT
QRVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTSNFDYVVEYKIDGLS
VALEYENGLFIRGATRGDGNVGEDVTENLKTIRSIPLRLKEDISIVVRGEVFMPKDEFIK
LNQEREENEEPLFANPRNAAAGSLRQLDPRITAQRKLDIFVFNVQWCEKELETHAEALEF
LKHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAGETAK
SPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNMDYIR
QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPVCGADVIKFEDEVAYR
CTGVECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFEKGLIKTPADIYYLKFEDLVNLE
RFGVKSTNNLLKAIQASKNRPLDRLIYALGIRHIGQKAAKTLAEHISSIDDLFTITEEQL
LSLPDFGEKMAKSVVTFFRQDQTKHLIERLKAAGVNTVSEKKAKSDILKGYTFVLTGALS
KYSRNEAKEILESLGAKVTESVSKKTTAVIVGQDPGSKFTKAQQLGVKILNEEDFEKLVK
ASSREEAEKILME
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtttataaaaaaaaggataagagaacttgttgatcttatcaattatcatgat
tataaatactatgttgaagataatccagagatcagcgactatgaatatgatatgttatat
cgtgagcttgttgagcttgaaaagcaatatcctgaatatgtatttccagattctcctact
caaagggttggtgggaaggtaaaagaaggttttaaagaggttgtgcatcgtgtgcctctt
ctttcactttcaaacgtgttcaatgagggggaactttacgattttgacagaagactaaag
gaacttcttggtacatctaattttgactatgttgttgaatacaagattgacgggctatct
gttgcgcttgaatatgagaatggtctttttatcaggggtgcaacccgtggagatggcaat
gtaggtgaggatgtcacagaaaacttaaagactataaggtctattccgctaaggctaaaa
gaagacatctccattgttgttcgtggagaagttttcatgccgaaagatgagtttataaag
ctcaaccaggaaagggaagagaatgaagaacctctttttgcaaatccacgaaatgcagcg
gcagggtcgcttcgtcagcttgacccaagaataacagctcaaagaaagcttgatatattt
gtgttcaatgttcagtggtgtgaaaaagagcttgaaacacatgcagaagcgcttgagttt
ttaaagcatcttggttttaaagtttcacctgactatgttgtttgcagggatattaaagaa
gcatttgaagctataaagaaaattgaagaaaaaagggacttgcttccttttgaaatagat
ggtgcagttgtaaagctaaaccagctaagactgagagatgttgcgggggagactgcaaag
tcgcccagatgggctgttgcttacaaatttccgcctgagaaaaaagagacaaagcttttg
gatattgaggtcaatgttgggcgcacaggtattctaacacccacagcaattttggagcct
gtaagaatttcaggttctgttgtttcaagggcaactcttcataacatggattatataagg
caaaaggacattagaattggcgatacagtaatagtacaaaaagctgcagagattatccct
gaggttgtggaggttgtgttttcaaaacgaacggggcaagaaagaatttttgagatgcca
aagaaatgtcctgtttgcggagcagatgttataaaatttgaagatgaggttgcatacagg
tgcacaggtgttgaatgccctgctaaaagttacaggttaatcttacactttgtttcgcgc
gatgcaatggacatcgccggcatgggcgaaatggttgtaaaaaccttgtttgaaaaagga
cttataaagactcctgctgatatttattatttgaagtttgaagacttggtaaatttagag
cgttttggagtaaagtctacaaataatttgttgaaagctatacaggcatctaaaaacaga
ccattagacaggctaatatatgcgctggggataaggcacattgggcaaaaagctgcaaaa
actcttgctgagcatatatcgtctatagatgacctttttactataacagaagagcagctt
ttaagtcttcctgactttggtgaaaagatggcaaaaagcgttgtgacatttttcaggcag
gatcagacaaaacacctaatagaaaggctaaaagctgctggtgtaaatacggtttctgaa
aagaaagcaaaatcggatattttaaaaggctacacatttgttttgacaggggctttgtca
aagtatagtagaaatgaagcaaaagaaatattagaaagtcttggtgcaaaagtgacagaa
agtgtatctaaaaagacaacagctgtgattgtaggtcaggaccctggtagcaaatttaca
aaagctcagcagcttggtgttaaaattttgaacgaagaagattttgaaaagttagtaaaa
gcttcgtcgcgcgaagaagcagaaaagattttaatggagtga
DBGET
integrated database retrieval system
