Cyclopterus lumpus (lumpfish): 117734936
Help
Entry
117734936 CDS
T09199
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein-like isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117734936
03036 Chromosome and associated proteins [BR:
clum03036
]
117734936
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117734936
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117734936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
117734936
NCBI-ProteinID:
XP_034395183
Ensembl:
ENSCLMG00005008334
LinkDB
All DBs
Position
8:3968249..4001216
Genome browser
AA seq
1839 aa
AA seq
DB search
MAPIRDSVSHSPNQTGLEHPGLDSQYETSPWSSGSPCSSDGNSNWSKVLVDGSADKPNNP
SSTNSSVWPPSSSSFSCSSSSSSSGCGSGSDPELASECMDADSSSSVGSEKNLAAVTTVM
MMSANASSSVSSTASSPSSVVTSAMMVGVSVNGDSNGNSRQVIGGGIGTISGANNGNNIT
GSSHYVAGSSSIGSNNHNNKPVNNGGVWGSNMITTGGSTPCINGGLNPNTLNPNANHGAW
PQNPSPVSQGQRPPQAQGMSSKLGLAPQQSPVLGWGGKAAPNSSSMMEDAEVNNGTASSK
VLGSSNSGNGGLQPTNLNTESNGPNNTIMMNTTTTTTTNATMTSSPPNSTASPQLSGDCS
WSSVGGGNGVPLANGNSSSAPQHPQGEPGGPGAFGTPWGATTYPGDKGTPNADTVNPPNP
AIMQTGNPQISSTAAYKSNNNHNSMLAPRWDQGPASNPNQPQSNLSWGIGSNQIPGSAGQ
TPGNGNQTTMGPSAGVPRPWGSSASSSSSSSSSSSASNNKTSNGEWGSVPPGNNHPDPGS
HKGSSANNGWKSLEDDAMGMGGGGGGGGGGGSHALGSVTGGWGRTGGSEGSAESSGGRSS
SDRDSSQPKGGNRRKVSDPPTAVPAVPQTDVDPRVLSNTGWGQTPIRQNTSWDVNSSANH
RVQGPKGDERKHSGGGSGWGTATPAAPSQTSGGWGGGPGNSGPGGSGWGERPTSGPASGG
GQSSWNDGSSYRGSSNNNNNSNTWSNNANKDDRSNTWTNAPKPQQGWGSNSGNGSERWGN
GGDGARAGGKNHWGEPQKGASCDSNRSGSGCWNESSRTNNTSSSSNTWVGSGGSNPPDQS
TPNPGSNWGDSVHKPNPQSNNQSWGEPMKNNHGAQNWGEPNPKPSNEWGKGPESNMSRGN
QAPNKPTGWQGGPIPAGGTKEEVTTGWEEPSPESVRRRTEIDDGTAAWGEPVKRSGGAVN
MRNRSGQSDQESVGPSTQHQSHPARNSMPPPPHPHPHPAPPPQPMQPHAQDKSCSSTWGE
PFPQKESSTWEPAPAPPVKVDNGTSAWGKPMDTSSTWEDPNRDNREPGPGWNGQHKSVAP
GPKPMETWGGEEASMGNSWDQEEEVEIGMWSNSQQDNRSHDQNTWSYKHKCSNKMNKPVN
KQDEPWMKPFINQFNSMNFSRDSPDDSMKTGAGMVQDKRMDMGGMGDYNGVMGKNPGSRH
QLHKDFAMDRSPYYEKNVNPMIGGSSVAQGRGGPQSQVPPQPNLRNQVPPPILPSQVPPS
LLKYSGGNGGLNPLFGPQQVAVLNQLSQLNQFSQLSQLNQISQLQRLLFQQQQQQQQQQK
AQSQRAMPVGRPTEQTRPIGSSPSMMQPPRHLDPSLLKQAPPHKPYLDNYMSHNTPEMQK
EAAALGPFSNFPLSLNSNLNVPLDMGGGGAVGYKEPQSRLKKLWATDPLEQNSKPGAMSS
GLRLEDSPFYDFLSPGPSPLSPPGQSMGSVGDGWPPRANSPPPHGNTVTWPPEFRPGEPW
KGYPNIDPETDPYMTPGSVINSLSINTVRDTDHLRDRNNGPSSSLNTTMPSNSAWSSIRA
SSHSGSLTSTAQSTSARPSESKWSPGGGSVSNSSLAHELWKVPLPPKALSVAAPSRPPPG
LTSQKPSSASSGWDGSALRLGGWGSSESRYTPGSSWGDSSSSSGRSQWLVLRNLTPQIDG
STLRTLCMQHGPLITFHLNLPHGNAVVCYSSKDEAAKAQKSLHMCVLGNTTILAEFASEE
EINRFFAQGQSLATPSSGWQAIGSSQSRMDQSHTFPSRAPEPNQWNSSDLHSSSLWGGPN
YSSSLWGNPSGTEAGRLSSPSPISSFLPVDHLTGGGDSM
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atggctcccattcgggactccgtcagccactcccctaatcaaacaggtctggagcatcct
ggcttggactcgcagtatgagacttccccctggtcctctggctctccctgcagcagtgac
ggcaacagcaactggagcaaagtcctagtggacggaagcgccgacaaacccaacaacccg
tcttcaaccaactcttccgtttggcctccctcctcctcttcgttctcttgctcttcctcg
tcttcctcttctggttgcgggtcaggatcagaccccgagttggcatcagaatgcatggac
gcagactctagctcctcggtcggctcagagaaaaacctcgccgctgtgacgacagttatg
atgatgtcagcaaatgcttcttcctctgtgtcttctacggcttcctctccctcttctgta
gtgacttctgccatgatggtcggcgtttcagtaaatggagacagcaacgggaacagtcgt
caggtaatcggtggagggatcggaaccatcagcggtgcaaataacggaaataacatcacc
gggtcctcccactatgtggctggatccagcagtattggcagcaataaccacaacaacaag
cccgtcaataatggtggtgtatggggcagcaacatgatcaccacaggcggaagcaccccc
tgcatcaatggagggttaaatccaaacactttaaacccaaatgccaaccacggtgcctgg
ccgcagaatccaagcccagtgtcccagggccaacggcctccacaggctcaggggatgagt
tccaaacttggtctagctccccagcagagccccgtactgggctggggaggcaaggcagct
ccaaacagcagcagtatgatggaagatgctgaggtgaataatggtacagcaagcagcaag
gtgttaggaagcagcaacagtggaaatggtggcctacagcctaccaaccttaacactgaa
tccaatggaccaaataacactattatgatgaatactactacgactactactactaacgcc
acaatgacctctagtccaccaaactctaccgcctcgccccagctcagcggggactgctcc
tggagctctgttggaggagggaatggggttccgctggccaatggaaactcctcatcagcc
ccccagcaccctcaaggagaaccgggcggtcctggggccttcggtacaccttggggtgca
actacctaccctggagacaagggcaccccaaatgcagacactgtgaaccccccaaaccct
gccataatgcagaccgggaacccccaaatatcctctactgctgcttacaagagtaataat
aaccacaatagcatgctggccccacgctgggaccaggggcccgccagtaatccaaaccag
cctcagagcaacttgtcctggggtatcggctcgaatcaaatcccaggttctgcaggccaa
acaccaggaaatggcaaccaaactacaatgggcccttcagcaggggtacctcgcccttgg
gggagcagcgcatcgtcctcttcctcttcatcatcgtcctcttctgcatctaacaacaag
acgtcaaatggagaatggggatcagtacctcctggtaacaaccatccagatcctggaagt
cataaaggaagctctgccaacaatggctggaagagcttggaggatgacgccatgggcatg
ggaggaggtggtggaggaggtggaggaggtggaagccatgccctggggagtgtcactgga
ggctggggtcgcactggaggaagtgagggaagcgcagagagctccggaggccgatccagc
tcggacagagacagcagccagccaaaaggaggaaatcgcaggaaagttagcgatcctcca
acagcagtaccagctgtcccccagaccgacgtggacccgagggttctgtccaacactgga
tggggacagacgcccatacggcagaacacctcctgggatgtcaattcttctgctaaccat
agagtccaaggacccaaaggagacgaaagaaagcatagcggcggaggctccggatggggc
acagcgacaccggcagctccctcccaaacctctggaggttggggtggtgggccgggaaac
tcgggcccaggaggttctggctggggagagcggccaacatctgggccagcgagtggaggt
ggacagagtagctggaacgatggctccagctatagggggagcagcaacaacaacaacaac
agtaacacctggagcaataacgcaaacaaagatgaccggtccaatacgtggactaatgcc
cccaaaccgcagcagggctggggatccaacagtggaaatggcagtgaacgctggggtaat
ggtggagatggcgcccgagcagggggcaaaaaccactggggggagcctcaaaaaggtgcg
agctgcgacagcaaccggtcaggctctggatgttggaacgagtcaagccgaaccaacaac
accagcagcagcagcaacacctgggtggggagcggaggatcaaatcctccagaccagagc
acgccgaacccgggctccaactggggcgactcagtccacaaacccaatcctcagagtaac
aaccagagctggggagagccaatgaagaacaaccacggagcccagaactggggtgaaccg
aatcctaagccttctaacgagtgggggaaaggtcctgaatccaacatgtctcgaggcaat
caagcccccaacaagcccacaggctggcaaggaggccccataccggcaggaggcacgaag
gaggaagtgacaactgggtgggaggagccttctccagagtccgttcgtcgacggacggag
atcgacgatgggaccgcagcttggggagaacccgtcaaacgtagcggtggagccgtcaac
atgaggaaccggtctggccaatcggaccaggagtctgtgggcccgtctactcagcaccag
tcccacccagcacgcaactcgatgccgcctcctcctcaccctcatcctcatcctgctcct
cctcctcaacccatgcagcctcacgcccaagacaaaagctgcagttctacttggggcgag
cctttcccccagaaggagtcctcaacgtgggaacctgctcctgctccacctgttaaagtg
gacaatgggacgtctgcctgggggaagcccatggacaccagctccacctgggaagatccc
aacagggataaccgagagcctgggcctggatggaacggccagcataagtctgtagctcca
ggtcccaagcccatggagacatggggtggagaggaggcgtccatgggcaatagctgggac
caggaagaggaggtggagattggcatgtggagcaacagccagcaagacaaccggtcacat
gaccaaaacacctggagctacaagcataaatgctcaaacaagatgaacaaaccagtcaac
aaacaggatgaaccctggatgaaacccttcatcaaccagttcaacagcatgaacttctct
agagactctcctgacgactccatgaagaccggagcagggatggtgcaggacaagcgtatg
gacatgggcggtatgggcgactataatggagtaatggggaagaaccccgggtctcgacac
cagctccacaaggattttgccatggatcgcagcccttactatgaaaagaatgtaaaccct
atgattggtggcagcagcgtagcacagggccgaggcggcccccagtcccaggtccccccc
caacccaacctccgtaaccaagtgcctccacccatcctgccctctcaggtgcctccatcc
ctgttgaagtattcaggaggtaacggaggtctgaaccctctgtttggccctcagcaggtg
gctgtgctcaatcaactctcccagctcaaccagttcagccagctgtcacagctcaaccag
atcagccagttacagcgtcttctcttccagcagcagcagcagcagcagcaacagcaaaaa
gctcagagccagagagccatgcctgtgggacgaccgactgaacagacgcgtcctattggt
tcgtctccatcgatgatgcagccgccacggcacctggacccctccctgctgaaacaggcc
ccgccacacaaaccctacctggataactacatgtcccacaacacccctgagatgcagaag
gaagctgctgctctcggacccttcagcaatttccctttaagcttgaactctaacctgaat
gtacccctggacatgggtggtggcggagctgtgggctacaaagagccccagtccagactg
aagaaactttgggctactgaccctctggagcagaacagcaaacctggtgctatgtcgtct
gggctgcgtctggaggactctcccttctatgacttcctgtctcccggcccatctcccctg
agtcctcccggccaatcaatgggctcggtgggcgatggctggccaccccgtgccaactcc
cccccgccccatggaaacactgtcacctggcccccagagttccggcccggggagccgtgg
aaaggataccccaacattgaccctgagaccgacccttacatgacccccggcagtgtcatc
aactccctctccatcaacaccgtccgtgacacagaccacctcagggacaggaacaacggg
ccatcctcatcactgaacaccacgatgccttctaacagtgcctggtcatccattcgtgcc
tccagccacagcggttccctcaccagtacagcacaaagcacttcagccagacccagtgag
tcaaagtggtctcccggcggcggttctgtgtccaactcctccctggcccatgagctgtgg
aaggtccccctgcctcccaaggcgctctccgtggcggccccctccagaccaccacccggc
ctcaccagccagaagcccagctctgcctcctccggctgggatggctctgccctgaggctg
ggagggtggggctcctctgagtccagatacacacctggttccagttggggcgacagcagc
agcagctcagggagaagccaatggctggttctgagaaatctcacacctcagattgacggc
tccaccctgaggaccttgtgcatgcagcacggccctctgatcacattccacctcaacctg
ccgcacggtaacgccgtggtatgctacagctccaaggacgaggccgcaaaggcccagaag
agcctgcacatgtgtgttttggggaacactacgattctggccgagtttgccagcgaggag
gaaatcaaccgattctttgcacaagggcagtcattggccactccctcctccggctggcag
gccattggctcctctcagagtagaatggatcagtctcacacctttcccagccgcgctcct
gaacccaaccagtggaacagcagcgatctccacagctcctccctctggggtgggcccaac
tattccagtagcctgtgggggaaccccagtggcaccgaggcagggaggcttagcagccct
tctccaatcagctccttcctcccggtggatcacctgacaggcggtggggactccatgtga
DBGET
integrated database retrieval system
