Cyclopterus lumpus (lumpfish): 117737773
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Entry
117737773 CDS
T09199
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117737773 (si:ch211-114c17.1)
Spliceosome [BR:
clum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
117737773 (si:ch211-114c17.1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_14
TPR_19
TPR_16
Suf
TPR_12
TPR_11
TPR_MalT
GAT
Motif
Other DBs
NCBI-GeneID:
117737773
NCBI-ProteinID:
XP_034399828
Ensembl:
ENSCLMG00005005192
LinkDB
All DBs
Position
10:complement(14989515..14996241)
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AA seq
739 aa
AA seq
DB search
MAAEGCEEMSGNGELEESSGSESSIYESMEASEVAASPPAAMAEMSEENGSPAVAPEALV
GPDPVTFSMPPPAEDEEGEFPADFERLWKAAHDNPQDFTSWTDLLQYCEQESHITASRRA
LEAFLTRYPLCYGYWKKFADLERRAGYNNKAEEVCVQGLQAIPLSVDLWIHYINLLLGTL
DMNLPESPTRIRCVFEDAVVAAGVDFHSDRLWDLYVEWEKEQGNMKKAAAVLDRVLKVPT
QLYNTHYDKFKEHLNSQEPKEVLSPEEYEELRTLCRQSQKAERAEQAQEVEAERPPGEEE
PVTPEGTDTEELMQKMREQVLVRRDKVYQDNEGEVRKRWHYEDAIKRPYFHVKPLDRLQL
RAWHSYLDWEIAQLNKDTKDPQDPQQDPEQAVTEEPEVTAQPQEESEVAAVAHDDSRVRI
LFERCLIACALYEEFWIRYNQYLESQNMNEARAIFKRACEIHLAYKPNIHMQWATFEERH
GDLTEARRVLEALEKTLPGLAVVRLRRSALERRAGQLDQSEALLHEAVNESKEKPTLHAF
YSIKLARLLLKVGRNPSRARRVLQEALEISPDNDKLHLNLLELEVSGDPSAEAVQECVTR
ALAAPLAPHTKILFSQRRLQFAEDYSNSIQSVLSVYEEHQKLLKELGGTKRGAENGDDDS
EKLSKSDDGSAVAVSAEVQPTMPHVPITTPPPPVIGADTSSQASYGGYGSWYQQPQYGSY
GSYGYQNTWNYNQGYYPPS
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaaggctgtgaggagatgagcggcaacggggagctcgaggagtcttcaggt
agtgagagcagtatttatgaatccatggaggcctctgaggttgctgcatcgcctccggct
gcaatggcagagatgtcagaagagaacggcagtcccgccgtggcccctgaggccctcgta
ggccctgaccctgttaccttctcaatgccaccacctgcagaagacgaggagggagaattt
cccgcagactttgagcgcctgtggaaggctgcccacgacaatcctcaagacttcaccagc
tggactgacctgctgcagtactgcgagcaagagagtcacatcaccgcgtcacgcagagcg
ctggaggctttcctcactcgttatccactctgctacggctactggaagaaatttgctgat
cttgagcgccgtgctgggtacaacaacaaagcagaggaggtgtgtgttcaggggctccag
gcaatccctttgagtgtagatttgtggatccactacatcaacctgctgctgggaacactg
gatatgaacctgcccgagtcgcccacgcggattcgctgtgtgtttgaggatgcggttgtg
gcagcaggtgtggacttccactcagacaggctttgggatctttatgtcgagtgggagaag
gagcaggggaacatgaagaaagcagcagccgtcctggacagagtcctcaaagtccccacc
cagctctataacacccactacgacaagttcaaagagcacttgaacagccaggagcctaaa
gaggtgctttccccggaggagtatgaggagctgaggacgttgtgccggcagagtcagaag
gcagagcgtgccgaacaagcccaggaggtggaggcggagaggccgccaggggaggaagag
cccgtcacacccgagggcacagacacggaggaattgatgcagaagatgagggaacaagtg
ctggttcgcagggacaaagtgtaccaggacaacgagggagaagtccgcaagagatggcac
tatgaagacgctatcaaacgtccttacttccatgtcaagccactggatcgcctccagctg
cgggcctggcactcctacctggactgggagatcgctcagctgaacaaggacaccaaagac
ccccaagacccccaacaagatccagagcaggcagtgacagaggagccggaggttacagcc
cagcctcaggaggaatcagaggtcgctgcggttgcccatgacgacagcagggttcgcata
ctcttcgaacgttgtctgatcgcctgcgctctgtatgaggagttctggataaggtacaat
cagtacctggagtcacagaatatgaacgaggcacgggccattttcaaacgagcctgtgag
attcacctggcgtacaaacccaacatccacatgcagtgggccacgttcgaggagaggcac
ggtgacttaaccgaggcccgacgagtgctggaggctctggagaaaactctaccagggttg
gcggtggtccgtcttcgcaggtcagctttagagaggcgagcgggccagctggaccaatcg
gaggccttgctgcatgaggcggtgaatgaatccaaagaaaagcccacgttacacgctttt
tattccatcaagctggctcgtttgctgctgaaggtgggcaggaaccccagcagagcccgc
agagttttacaggaggcgctggagataagtccggataacgataagctgcacctgaacctg
ttggagctggaggtgtcgggggacccctcagcggaggcggtgcaagagtgtgtgacgcga
gccctggcagctcccctcgccccacacaccaagatcctcttttcccagagacgtctgcag
tttgcggaggactacagcaactctatccagagtgtgctgtctgtctatgaggagcaccag
aagctgctgaaggagctcggtggaactaagagaggagctgagaacggtgatgacgactcg
gagaagctgagcaaaagtgacgacggctcagctgttgccgtgtctgctgaagtccaacct
accatgccgcatgtccccatcacgacaccccctcctcccgtgatcggcgcagacaccagc
tcacaggccagctatgggggatacggcagctggtaccagcaaccgcagtacggcagctac
ggcagctacggttaccaaaacacctggaactacaaccaaggctactatcctcccagctaa
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