Cyclopterus lumpus (lumpfish): 117741948
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Entry
117741948 CDS
T09199
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46 isoform X1
KO
K12590
exosome complex component RRP46
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117741948 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117741948 (exosc5)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117741948 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
BNR_3
Motif
Other DBs
NCBI-GeneID:
117741948
NCBI-ProteinID:
XP_034405127
Ensembl:
ENSCLMG00005009610
LinkDB
All DBs
Position
13:12238312..12242825
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AA seq
220 aa
AA seq
DB search
MMEVCGSSSVTLREFGCEQSLLSRPDGSASFSQGDTSVLAAAYGPAEVKVSKEIYDRATL
EVLIQPKVGLPSVRERSQEQCVRETCEASLLLSLHPRSSLTLILQLIHNDGSILSCFLNA
ACMALMDAGLPMSCLFCGVTCAINADGQIITDPTAVQEKESRAVMTFAIDSTKRRVMMSS
TKGSFSVHELQQCIAVSQEASEKIFQFYRDSVSRRYSKTL
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagtgtgcggctcctccagtgtgactctgagagagtttggttgtgagcagagt
ttattgtctcgacctgacggctctgcgtccttcagtcaaggagacacaagtgtgttggcc
gcagcttacggaccagctgaggtcaaggtcagtaaggaaatctatgaccgggcaactctg
gaggtgttgatacagcccaaagtgggactgccaagtgtaagggagcgatcacaagagcag
tgtgtgcgagaaacctgtgaggcatctctgctcttgtcacttcatcctcgctcctccctc
actctcattcttcagctgatacacaacgatggttcaatcttgtcctgctttttgaatgct
gcctgcatggctctcatggatgcgggactgccgatgagttgcctgttctgcggcgtgacc
tgtgccatcaacgcagatggtcaaatcatcacagaccccactgcagtgcaggaaaaggaa
agtcgagctgtgatgacctttgctattgacagcacaaaacgcagagtaatgatgtcgtcc
accaaaggatcgttttcagtacacgagctgcagcagtgtatcgcagtcagtcaggaagca
tcggagaagatcttccagttctacagagactctgtcagtcgccgatactctaaaaccctc
tga
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