KEGG   Colletotrichum lupini: CLUP02_01774
Entry
CLUP02_01774      CDS       T08561                                 
Name
(RefSeq) DSHCT domain-containing protein
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
clup  Colletotrichum lupini
Pathway
clup03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:clup00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLUP02_01774
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clup03019]
    CLUP02_01774
   03041 Spliceosome [BR:clup03041]
    CLUP02_01774
   03009 Ribosome biogenesis [BR:clup03009]
    CLUP02_01774
   03016 Transfer RNA biogenesis [BR:clup03016]
    CLUP02_01774
Enzymes [BR:clup01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     CLUP02_01774
Messenger RNA biogenesis [BR:clup03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     CLUP02_01774
Spliceosome [BR:clup03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    CLUP02_01774
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    CLUP02_01774
Ribosome biogenesis [BR:clup03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    CLUP02_01774
Transfer RNA biogenesis [BR:clup03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    CLUP02_01774
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C ResIII AAA_22 ATPase_2 nSTAND3 eIF3_p135
Other DBs
NCBI-GeneID: 73335821
NCBI-ProteinID: XP_049136768
LinkDB
Position
1:join(5933742..5936908,5936962..5937142)
AA seq 1115 aa
MDELFDVFDAQPDAQNESHSEPEPETEVAEPPQKSRKKDKKSKKRKADGGMKNGVAEKPE
DDDMPDADDTSKDGQDADETEDPAAASDEQQEPHKDKRRKKEDEAQPVLTDTFQTAQSRE
VAGAAVFTPAQDESLVLSHNIQHQVALPPDLDYEYIPLSEHKPPAEPARQYSFKLDPFQA
LSVASIEREESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKYRDFEAL
FGDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVV
WEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFFPAGG
NGIFLVVDEKGVFREGNFQKTMSLIEAGKGQDPNNANASWKGKGAKKQTQKGGQASDMKS
DISKIIRMIMQKSFHPVIVFNFSKKEVENLALQISHFQFNNDSEQAMVKTVFNNAIQSLS
EADRELPQIQNLLPLLQKGIGVHHSGLLPILKETIEILFQESLIKVLVATETFSIGLNMP
AKTVVFTQTNKWDGVQRRPLTPSEYIQMSGRAGRRGLDTRGIVIMMIDDKMEPDTARGMV
VGEQDRLNSAFYLGYNMTLNLLRIEAISPEFMLERCFHQFQTGASVPALERDLVALQQER
DSMSIADEATVKDYYNLRNQLEQYTSDMRAVIQHPEHCTDFMQPGRLVRIHDPKKTNNTI
GGTDFGWGVVANLIRRDRNRKQGEPEYPPQESCLIDVMMVVDQKSAPVAEGSRHLTSDLP
KGLVPYPNPEQPDNGARFEIIPCLLTCVKSISQIRVFMPKDCKSQSALNEVGNSLREVHR
RFPDGLPILDPVENMGINDESFKALMRKIEMLEARLLTNPLHGSPLLPELYLQYRSKEKL
GEQIKSKKKEIATLHSIAQMDELKARKRVLRRLGFLNESEVVELKARVACEISSTEGHEL
VLAELLFDRFFNELSPELIAATLSCFVLDEKLETAALREELAKPYREVQAKAKQVAKVSR
ESKLELNEEEYLAGFKWQLMETVYSWAQGKPFADICKMTNAYEGSLIRLFRRLEELLRQM
GQGAKVMGSDELTQKFEDSLAKIRRDIVAAQSLYL
NT seq 3348 nt   +upstreamnt  +downstreamnt
atggacgagcttttcgatgttttcgacgctcaacctgacgcgcaaaacgagtcacacagc
gagcccgagcctgagactgaggtagccgagccccctcagaagtcgcgcaagaaggacaag
aagagcaagaagcgcaaggccgatggtggaatgaagaatggcgtcgccgaaaagccagag
gacgacgacatgcccgacgccgatgatacctccaaggatggccaggacgctgacgaaact
gaagatcccgccgctgcttctgacgaacagcaggagccccataaggacaagcggaggaag
aaggaagatgaggcccagcctgtcttgaccgacaccttccagactgcccagtcccgagag
gttgctggcgccgcggtcttcaccccagcacaggacgaatcgctcgtcctgtcccacaac
atccagcaccaagtcgccttgccgccggacctggactacgaatacatccccctctccgag
cataagccgcccgcggagccagcacgccagtacagctttaagttagatcctttccaggca
ctgtctgtcgcttcgatcgagagggaggagagcgtgttggtttctgcccacacctctgcc
ggaaagaccgtcgtcgccgaatacgccattgcgcaatgtctgaagcgtaaccagagagtc
atttacacaagtcccatcaaggccctcagcaaccagaaataccgagacttcgaagcacta
tttggcgatgtcggtctgatgactggtgatgtcacgatcaatcccaccgccagctgtttg
gtcatgaccaccgagattttgcgctccatgttgtaccgtggttccgagatcatgcgagag
gttgcctgggtcgtctttgacgaaatccactacatgagagacaagaccagaggtgttgtc
tgggaagagaccatcattcttcttcccgataaggtccgctacgtctttttgtccgccacc
attcccaacgccttccagtttgcggagtggattgccaagatccatcaccaggcgtgccac
gtcgtctacactgatttccgtcccacgccccttcaaaactacttcttccctgccggtggt
aatggcatcttcctggttgtcgacgagaagggcgtgttcagagaaggcaactttcagaag
accatgtccctcatcgaggcgggcaagggtcaagaccccaacaacgcgaatgcaagctgg
aagggcaagggagccaagaagcagacacaaaagggtggtcaggcgtccgatatgaagtct
gatatctccaagatcattcgcatgatcatgcagaagagcttccaccctgtcatcgttttc
aacttcagcaaaaaggaggttgagaacctggctctgcagatctctcatttccagttcaac
aatgactcggagcaggccatggtcaagaccgtgttcaacaatgccatccagagcttatct
gaggctgatcgcgagcttcctcagatccagaacctgcttcctctgttgcaaaagggtatc
ggtgtgcatcactctggtcttcttcccattttgaaggagaccatcgagattctgttccaa
gagtctctgatcaaggtgcttgtcgcaaccgaaaccttctccattggtctcaacatgcct
gccaagactgtcgtcttcacccagactaacaagtgggatggagttcaacggagacctctt
accccgtccgagtacattcagatgtctggtcgtgctggtcgtagaggtctggatacgcgt
ggtattgtcatcatgatgattgacgacaagatggagcctgacactgcccgcggcatggtc
gtgggtgagcaggatcgtcttaactccgccttctacctcggctacaacatgacccttaac
ctcttgagaatcgaggctatttcccccgagttcatgcttgagcgttgcttccaccagttc
cagacaggtgctagtgtcccggctttggaacgtgacttggttgctctccagcaagagagg
gacagcatgtccatcgctgatgaggctacggtcaaggactactacaacctccgcaaccag
ctggagcagtacacaagcgacatgcgcgctgtcattcagcaccctgagcactgtaccgac
ttcatgcagcccggccgtctggttcgcattcacgaccccaagaagaccaataacaccatt
ggcggaaccgacttcggctggggtgtcgtggcgaatctgatccgccgcgaccgcaaccgc
aagcaaggcgagcccgaatacccgcctcaggagtcctgcctcatcgacgtcatgatggtt
gtcgaccagaagagcgcacctgttgccgaaggttccaggcatttgacctctgatctgcca
aagggcctggttccctacccgaaccccgaacagccggacaacggagctcgcttcgagatt
atcccctgtcttctgacttgcgtcaagtccatcagccagatcagagtcttcatgcccaag
gactgcaaatctcagtccgcgcttaacgaggttggcaactctcttcgggaggttcacaga
cgcttccccgacggactgcccattttggatcctgttgagaacatgggcatcaatgacgag
tctttcaaagccctgatgaggaagattgagatgttggaggcgcgcctcctcaccaacccc
cttcacggatcaccactgctgcccgagctctaccttcagtatcgctccaaggagaaactt
ggcgagcagatcaagtccaagaagaaggagattgcgacactccacagcattgcgcagatg
gatgagctcaaggcgcgcaagcgtgtcctgcgccgtctcggattccttaacgagtctgag
gttgtcgagcttaaggctcgtgtcgcctgtgagatctcatccaccgaaggtcatgaactt
gttcttgccgagcttctgtttgatcgcttctttaatgagctctctcccgagctcattgct
gctacactcagctgtttcgtcttggacgagaagcttgagacagcagccctgcgcgaggaa
ttggccaagccctaccgggaggttcaggccaaggctaagcaggtcgctaaggtcagccgg
gagagcaagcttgagctcaacgaggaggagtacttggctggcttcaagtggcaattaatg
gagactgtctactcgtgggcacaaggcaagccgtttgcagacatctgtaaaatgaccaat
gcctacgagggttccctgatccgccttttccgccgtctggaagagcttctgcgccagatg
ggccagggcgccaaggtcatgggcagtgacgagcttacacaaaagttcgaggacagtctc
gccaagatccgccgtgacatcgtcgcggcccagagtttgtacctgtaa

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