Colletotrichum lupini: CLUP02_02861
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Entry
CLUP02_02861 CDS
T08561
Name
(RefSeq) DNA ligase I
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
clup
Colletotrichum lupini
Pathway
clup03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
clup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CLUP02_02861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clup03400
]
CLUP02_02861
Enzymes [BR:
clup01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CLUP02_02861
DNA repair and recombination proteins [BR:
clup03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CLUP02_02861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
RNA_ligase
BRCT
LIG3_BRCT
RTT107_BRCT_5
DNA_ligase_IV
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
73336899
NCBI-ProteinID:
XP_049139032
LinkDB
All DBs
Position
2:complement(join(1628720..1631612,1631665..1631768))
Genome browser
AA seq
998 aa
AA seq
DB search
MSQRKRQKSPDAAAIDEEERQYAIGGTTLEELDEKYPNRPRNHSKTMRFSELFQSLFNPL
NENKKQPVGRGPPRSKKGPHGPHKLSPQEQRRHLIERFISRWRNEVGNDIYPALRLILPD
KDRDRGVYGLKENAIGKLLVKLMKIDKNSEDGHNLLHWKLPGQTTFSRLAGDFAGRCFEV
LSKRPMRTEVGDMTIAEVNELLDKLAASTGELENLEVFEIFYERMNAEELMWLIRIVLKQ
MKVGATERTFLDLWHPDGEALFSVSSSLRRVCWELFDPRIRLEQEDTGVTLMECFQPQLA
QFQMPSSFQKMVDYLRTTEEDPEFWIEEKLDGERMQMHVAEDPSVPGGLRFCFWSRKAKD
YTYLYGNGLKDEKGALTRHLANAFSEGVRNVILDGEMITWDPEVDKIMPFGTLKTAALAE
QNNPYNNTGPRPLYRVFDILLLNDQPLTQYTLRDRHRALEKAVKGVHRRLEIHEYESATT
PEAIEPLLRKVVAEASEGLVLKNPRSMYRLNSRNDDWLKVKPEYMSEFGESLDCVVIGGY
YGSGHRGGAISSFLCGLRVSENHIHAGANPEKCFSFFKVGGGFTAADYAEIRHRTDGKWT
TWDPKKPPVEYIELAGGDRQFERPDVWIRPSDSVVVEAKAASIGNSDQFSLGFTLRFPRF
RKLRTDKNWDEGLSVQEFLDLRRRVEAEAKEKTMSVENRKRKSVKRVKREVVIAGTENMP
AQFQADKSKIFEGLEFCVLSESLKPFKKTKAQLETLIKENGGQVSQRAVPQSGMILLADK
NVVKVASLVKEGQKGNGVDIVRPKWIQDCLEQADESLLLPYEERHLLHATEALKTVALQN
TDMYGDSYARDISLVELREVLNMMPKKEPDTESFNKTQFLNQLEERGRGVGPMKGSMFHR
CAVHLVNVQEECDEDEIKMLKLRNYLTFGGARLISDAEDTETTHVVVVGDGSRRKDAAAA
MREEVSHRRKIPHIVTAEWVEDCWREKTLLDEEKYTRV
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcgcaagcgacaaaagtcgccagacgcggcagcgattgatgaggaagagagg
cagtatgctatcggaggaaccacactcgaagaattggacgagaagtacccaaatcgccca
cgcaatcattcaaaaacgatgcgcttttcggaactcttccaaagcctcttcaatcctttg
aacgagaacaagaagcaaccagtcggtcgcggcccacctcgcagcaaaaaggggccccac
ggaccacacaagctatcgccgcaggaacagagacggcacctcattgagcgctttatttcc
agatggcgaaacgaggtgggaaacgacatctacccggctttgcgactcatcctgcccgac
aaggatcgggatcgcggcgtctacggcctgaaggagaatgctattggcaaactcctcgtc
aagcttatgaagatcgacaagaactcggaagacggccacaacctccttcactggaagttg
ccgggtcagactaccttctctagactggctggcgactttgcgggccggtgcttcgaggtc
ctctctaagcggccgatgcggacagaggtcggcgacatgacgattgccgaggtcaatgag
ttgctggacaaactcgctgcgtcgacgggagagctggagaacctggaggtctttgaaatc
ttctacgagcgcatgaatgcagaagaacttatgtggttgatccgcatcgtgctcaagcag
atgaaggtcggcgcgaccgagcggacctttctcgatctgtggcatccggatggcgaagcc
ctgtttagcgtgtcgtcgagtctgcgacgcgtttgctgggagctttttgacccgaggata
cgtctggagcaggaggatacgggtgtcacccttatggaatgtttccagccccagctggca
cagttccagatgccatcttccttccagaagatggtcgattacctccggactacagaggag
gatcccgagttctggatcgaggaaaagctagacggtgagcgcatgcagatgcacgtggcc
gaagacccgagcgttccgggagggctgcgattctgcttctggtctcgcaaggcgaaagat
tacacctacctctacggtaacggattgaaagacgagaagggagctctgactcgccatctg
gcgaatgctttttccgaaggagtccgcaacgtcattctagatggagagatgattacttgg
gacccggaagtcgacaagatcatgccgttcggcaccctcaaaacagccgctctagccgag
cagaataacccctacaacaacacagggccgcgaccgctttaccgcgtcttcgacatcctc
ctactgaacgatcagcccctgacccagtacacgctgcgggatcgtcaccgtgccctagaa
aaggctgtgaagggtgttcataggagactggagatccacgagtatgagtctgcgacgaca
cccgaggccatcgagccgctcctccgcaaggtcgtcgccgaggcatcagagggcttggtc
ctcaagaatccgaggtcaatgtacagactcaacagccgcaatgacgactggctgaaagtc
aagccggagtacatgtccgagttcggagagtcgttggattgtgtcgttattggcggctac
tacggctccggacacaggggtggcgccatctccagcttcttgtgcggtctgcgtgttagc
gaaaaccatatccacgctggtgcaaaccccgagaaatgcttcagtttcttcaaagtcggc
ggcggcttcacagctgccgactatgcggagatcaggcatcggacggacgggaaatggacc
acgtgggacccgaaaaagccccccgtggaatacatcgagctcgccggcggcgaccgtcag
ttcgaaaggccggatgtctggatccgacccagcgactctgtcgtcgtggaggccaaggcc
gcgagcatcggcaactcggaccagttctccctcggcttcaccttgcgattcccccgcttc
cgcaagctgagaaccgacaagaactgggacgagggcctcagcgtgcaagagttcctggac
ctacggcgacgcgtggaggcagaggccaaagaaaagaccatgagcgtcgagaaccgcaaa
cgcaagtcagtaaagcgcgtcaagcgcgaggtcgtcatcgccgggacggagaacatgcct
gcgcagttccaggcagataagtccaagatattcgagggcctcgagttctgcgtcctgtcg
gagtcgctcaagccgttcaagaagaccaaggcacagctcgagacccttatcaaggaaaac
ggcggccaggtctcgcagcgggctgtcccgcagtctggtatgattctcttagcggacaag
aacgtcgtcaaggtagcgagtctagtcaaggaggggcaaaagggcaacggcgtcgacatc
gttaggccaaagtggattcaagactgtctagaacaggctgatgaatctctgctgcttccc
tacgaagagcgacacttattgcatgcgacggaagctctcaaaactgttgcactgcagaac
acagatatgtatggggacagctacgcccgcgacatcagtcttgttgagctgcgcgaagtt
ctcaatatgatgccgaagaaagaacccgatacggagtcttttaacaagacacaatttctc
aatcagcttgaggagcgtggacgcggggtaggcccaatgaagggatcaatgtttcatcgt
tgcgccgttcacctagtcaacgttcaagaagaatgtgatgaggacgagatcaagatgttg
aagcttaggaactatctgacctttggcggcgcacgcttgatcagcgatgccgaagacacg
gagactacgcacgtggttgtggtaggagacggcagccggcggaaagacgcggccgctgct
atgcgggaggaagtcagtcataggcgtaagattccacacatcgtgactgcggaatgggtt
gaagattgctggcgagaaaagacgttgctggacgaggagaagtatacgcgagtatga
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