KEGG   Columba livia (rock pigeon): 102089839
Entry
102089839         CDS       T02912                                 
Symbol
AFF4
Name
(RefSeq) LOW QUALITY PROTEIN: AF4/FMR2 family member 4
  KO
K15185  AF4/FMR2 family member 4
Organism
clv  Columba livia (rock pigeon)
Pathway
clv03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:clv00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    102089839 (AFF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clv03021]
    102089839 (AFF4)
Transcription machinery [BR:clv03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     102089839 (AFF4)
SSDB
Motif
Pfam: AF-4 AFF4_CHD AF4_int
Other DBs
NCBI-GeneID: 102089839
NCBI-ProteinID: XP_021156830
LinkDB
Position
Unknown
AA seq 1128 aa
MNREDRNVLRMKERERRNQEIQQGEEAFPPNSPLFAEPYKVTSKEDKLSSRIQSMLGNYD
EMKDLIGDRSLQKLVGIPKPTVPSTPDEKSNQSFFGDQRHSAGSHQSSKWTPVGPAPSTS
SQSQKRSSGLQGGHGAXFLHSKPRSSSPGKPSAVSSLSSSHSRSHGNDHHGKEHQRSKSP
RDPDANWDSPSRVPSFSSGQHSTQSFPPSLMSKSSSMLQKPTAYVRPMDGQESMEPKVPE
HYSGXXXXXXXLKPSSKAHLTKLKIPSQPLDASASGDVSCVDEILKEMTHSWPPPLTAIH
TPCKTEPSKFPFPTKESQQSSFGTGEQKRYNPSSKTSNGHQSKACESNQTDMLKDDLKLS
SSEDSDGEQDCDKTVPRSTPGSNSEPSQHNSEGADNSRDDSSSHSGSESSSGSDSESESS
SSDSEANEPSQSASPEPEPPPTNKWQLDNWLNKVNSHKVSPASSVDSNIPSSQGYKKEGR
DQGPGSGYADQSGSKDLISSTPGRDSKPTQKGSESSRGRQKSPAQSDSSTQRRTVGKKQP
KKVEKTSVEEPRGGLKIESETPVDMATNIPSNRHKAATKGSRKPNIKKEPKSSPRPTTEK
KKYKASSKSAQKSREFIETDTSSSDSDENESLPPSSQTPKYSESNRTPVKSSMEEDDSFF
RQRMFSPMEEKELLSPLSDPDERYPLIVKIDLSLLSRIPGKPYKDADAPKAEKKTVPEKH
VRESQKQTSDKSSTKGKRKHKQNEDESRASESKKTKLEEKAPSGHKTSSSRESSKPSAVK
EKDLLPSPAAAALQKDPKQDHGSRKRTVSQSSALKSSSALGKESGSKSSSSKQKKTEGKG
PGSAKDAKEKILNNSSSCPPAQSTESSKSRRAKLVFDDRTYSADHYLQEAKKLKHNADAL
SDRFEKAVYYLDAVVSFIECGNALEKNAQESKSPFPMYSETVELIKYTMKLKNYLAPDAT
AADKRLAVLCLRCQSLLYLRLFKLKKESALKYSKTLTEHLKNSYNNSQAPSPGMGSKPVG
MPSPVSPKLSPGNSGNYSSGAANPSGSGSSVTIPQRIHQMAASYVQVTSNFLYATEIWDQ
AEQLSKEQKEFFAELDKVMGPLIFNSSIMTDLVRYTRQGLHWLRLDAK
NT seq 3387 nt   +upstreamnt  +downstreamnt
atgaaccgtgaagaccggaatgtgctgcgtatgaaagaaagggaaaggcgaaatcaagaa
attcagcagggtgaagaagcctttccgcctaactctcctctctttgctgagccgtacaaa
gttaccagcaaggaggacaaattgtctagtcgtattcagagcatgctcggtaactatgat
gaaatgaaggatcttataggagacagatcgctacaaaagcttgttggaattcccaaacca
accgtaccctcaacaccagatgaaaaatcgaaccaaagtttctttggtgatcagagacac
agcgctggctcccaccagagcagcaaatggaccccggtggggccggcgcccagcacgtcc
tcgcagtcgcagaagcgctcgtcgggtctgcagggcgggcacggcgccnnctttttacac
tccaaaccccgttcttccagccccggaaaaccctctgctgtgtcttcgctgagctccagc
cattcgagatcccacggcaatgatcaccacggcaaagaacaccaacgttccaaatccccc
cgcgaccctgacgccaactgggactctccctcccgtgtaccctcgttttcaagcggacaa
cactctactcagtctttcccaccctcgctaatgtccaagtccagttcgatgttacagaaa
cccacggcgtacgtgaggccgatggacgggcaggagtccatggaaccaaaggtacccgaa
cactacagcggccnnnnnnnnnnnnnnnnnnncctgaagcccagcagcaaagcacatctc
accaagctgaaaataccctcccagccactagatgcatcagcatctggcgatgtgagctgt
gtggacgagatcctcaaagagatgacccattcttggcctccgccgctgaccgcgatccac
acgccctgcaaaaccgaaccatcaaagtttccttttccaacaaaggagtctcaacagtcc
agttttggcactggagagcagaaacggtataatccttcatcaaaaacatccaatggccat
cagtccaaagcatgcgaatcgaaccagacagatatgttgaaagatgacttaaaactcagc
agtagcgaagacagcgatggcgagcaggactgcgataagacggtgccgcggagcacgccc
ggcagtaattctgaaccttcacaacataacagcgaaggagccgataattcaagggatgac
tcgagcagccacagcggctctgaaagcagctcaggatctgactctgagagcgaaagcagt
tccagtgacagcgaagctaatgaaccgtcccagagcgcatcccccgagccagagccaccg
ccaacaaacaaatggcaactggataactggttgaacaaagttaactcacataaagtgtca
ccagcctcttccgtggacagcaatatcccgtcctcccaaggctacaagaaagagggccgg
gatcaggggccggggagcgggtacgccgatcagagcgggtccaaggatttgatctcttct
acgccggggcgagattccaaacccacccagaagggctcggagagcagtcgcgggaggcag
aagtcgcctgcccagagcgacagctccacgcagaggaggactgtgggtaaaaagcagccc
aagaaggtggaaaagacgtcggttgaagagccaagaggaggtcttaaaatagaaagtgaa
accccagtagacatggcaacaaatataccctcaaacaggcataaggcggccacaaaaggc
tccaggaaacccaatattaagaaagagcccaaatcttcccctcggcctacaacggagaaa
aagaaatacaaggcttcaagcaaatctgcccagaaatccagggaattcatagaaacagat
acctcatcctctgactcagatgaaaatgagagcctgcctccctcatcacaaacacccaaa
tactctgagagcaataggactcctgttaaatcttccatggaggaggatgacagctttttt
cggcaaagaatgttctctcctatggaagagaaagagctgctgtcaccactcagtgatcct
gatgaaaggtacccacttattgtgaagattgacctgagcctcttatcacgaataccaggg
aagccttacaaggatgctgacgcacccaaagcggaaaagaaaacggtgccggagaagcac
gtgagagaatcccagaagcagacgtctgacaagagctctacaaaaggcaaaaggaaacat
aagcagaatgaggatgaaagcagagccagtgaaagcaagaagacgaaactggaagaaaaa
gctccgtcaggacacaagacttcgagcagcagggagtcttcaaagcccagcgctgttaaa
gagaaggacttgctgccgtcgcccgccgccgcggccctgcagaaggaccccaagcaggac
cacggctctcggaagaggacggtcagccagtcctcggcgctcaagtccagcagcgccctg
ggcaaggagagcggcagcaagagcagctcgtccaagcagaagaagacggagggaaagggc
cccggcagcgccaaggacgccaaggaaaagattctgaacaattcatcgagctgccctcct
gctcagtctacggaaagttccaagtcaagaagagcaaaacttgtctttgatgacaggact
tactcagctgatcattatttacaagaagcaaagaagttaaaacataatgcagatgcattg
tccgacaggtttgagaaggccgtgtactacctggacgctgtcgtgtccttcatcgagtgt
gggaatgcattggagaaaaacgctcaggaatccaagtccccgttccctatgtattcagaa
actgtggaattaatcaaatacactatgaaactgaagaattacttggcaccggatgctacg
gctgcagataaaaggctggcagtgctttgtctccggtgccaatctctgctgtacctacgg
cttttcaaactgaaaaaggaaagtgcattgaaatattctaaaactctgaccgaacatctg
aagaattcctataataattctcaagcaccatcacctggtatgggaagcaagcccgtgggt
atgccgtctccagtctctccaaagctgtctccagggaattcaggaaattactcttctggg
gcagccaacccttcagggagcgggtcctcggtgacgatcccgcagaggatccatcagatg
gcagccagctacgtccaggtcacctccaacttcctctatgccactgaaatttgggaccaa
gccgagcagctgtctaaagaacagaaagagttctttgctgaactggataaagtgatgggc
cctctgatttttaattcgagcatcatgacagacctggtgcgttacacccgtcaggggcta
cactggttgcgcctggatgccaagtga

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