KEGG   Caldivirga maquilingensis: Cmaq_1124
Entry
Cmaq_1124         CDS       T00611                                 
Name
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cma  Caldivirga maquilingensis
Pathway
cma03030  DNA replication
cma03410  Base excision repair
cma03420  Nucleotide excision repair
cma03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Cmaq_1124
   03410 Base excision repair
    Cmaq_1124
   03420 Nucleotide excision repair
    Cmaq_1124
   03430 Mismatch repair
    Cmaq_1124
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cma03032]
    Cmaq_1124
   03400 DNA repair and recombination proteins [BR:cma03400]
    Cmaq_1124
Enzymes [BR:cma01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Cmaq_1124
    6.5.1.6  DNA ligase (ATP or NAD+)
     Cmaq_1124
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Cmaq_1124
DNA replication proteins [BR:cma03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Cmaq_1124
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Cmaq_1124
DNA repair and recombination proteins [BR:cma03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Cmaq_1124
   NER (nucleotide excision repair)
    Other NER factors
     Cmaq_1124
   MMR (mismatch excision repair)
    Other MMR factors
     Cmaq_1124
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 LytR_cpsA_psr
Other DBs
NCBI-ProteinID: ABW01952
UniProt: A8MDU6
LinkDB
Position
complement(1180673..1182484)
AA seq 603 aa
MESDLEFSNIVSVLKLVEATTQRTVMAKALSSLLAKTPPQVIDKVIYFLLGSLRPDWEGV
ELGLAERLTLRAISMATGLPIRQVEELYKKLGDAGEVAKRAAEIKRSKGGGGTIFDFIDT
GPKRRLTISKVYDTLMAIAKASGEGAQDTKVKLLSSLLTDAEPDEAKYITRFVIGRLRLG
VADMTILDALSDAFDVNRDLLEKAYHVYPDLGKIAKTLAEGGEEAVKAIKVTPGVPIQPM
LAERLSSPKEILNKLGGVAICEFKYDGERMQIHKLKDGTVKIFSRRMEDITNQYPDVAEY
AREAIDAEEFIVEGEGVAIDPDTGEFKPFQELMHRKRKHNIKEAIEEYPINLYLFDVMYV
NGQDLTDLPLPDRKKVLFSIIKPHEHVHHADWIITDDADSLEKFFLDAISSGCEGVMCKS
VKLGSVYEMGARGWLWIKYKRDYKSELSDTMDLVVVGAFWGRGKRAGTYGALLLAAYDPD
SDQFYTVCKVGSGFTDEDLKKLPQMLEPYKIPHRHPRVVSKMEPDIWFTPGLVLEITGAE
ITMSPLHTCCSVMLKGDVGLAIRFPRFTGRYRTDKRPEDATTVKEIFEMYSNQKKVKLTD
QVP
NT seq 1812 nt   +upstreamnt  +downstreamnt
gtggaatctgacttagaattctccaatattgtatccgtacttaagttagtggaggctaca
acgcagaggactgttatggctaaggcactctcaagcctacttgctaaaacgccaccacag
gtcattgataaggtcatatacttcctactgggtagccttaggcctgactgggagggtgtg
gagcttggtttagctgaaaggctaacacttagggcaatatccatggccactggcttacct
atcaggcaggttgaggaattgtataagaagcttggtgatgcaggtgaggtggctaagagg
gctgcggagattaagaggagtaaggggggtggtggcactatattcgacttcattgacact
ggacctaagaggaggctaacgatcagtaaggtctacgacactttaatggccatagcaaag
gcatctggggaaggagcccaggacactaaggttaagttactgtcaagtctattaactgat
gccgaacccgatgaggctaagtacattactagattcgtcatagggaggttaagattgggg
gtggctgacatgactattctagatgccttatcagacgcctttgatgttaatagggattta
ctggagaaggcttaccacgtttacccggacctcggtaagatagctaagacactggctgag
gggggtgaggaggctgttaaggcgattaaggttacgcctggtgtacctatacagcctatg
cttgctgagaggttaagtagccctaaggagattttgaataagcttggtggggttgccata
tgtgagtttaagtatgatggtgagaggatgcagatacataagcttaaggatggtactgtt
aaaatattcagtaggaggatggaggatataactaaccagtaccctgatgtagccgagtac
gcccgtgaggcaattgatgctgaggaattcatagttgagggtgagggtgttgcaattgac
ccggatacaggggagtttaagccgtttcaggaattaatgcataggaagaggaagcataat
attaaggaggctattgaggagtaccccattaacctatacttattcgacgtaatgtacgtt
aatggacaggacttaacagacctacctctacccgataggaagaaggtactgttctcaata
attaagccacatgagcatgttcaccacgccgactggataataaccgatgatgcggattca
ctggagaagttcttcctggacgcaatatcgtcaggttgtgaaggcgtcatgtgtaagtca
gttaagttaggctcagtctatgaaatgggggctaggggttggttgtggattaagtataag
agggattataagagcgagttatcagacacaatggatctagtggtggttggggcattctgg
ggacgcggtaagagagccggaacctatggtgcactcctcctagccgcatacgaccctgac
tctgatcaattctacacagtatgcaaggttgggagcggcttcactgatgaggatctaaag
aagctgcctcaaatgcttgaaccatataaaataccgcatagacaccccagggttgtttcg
aaaatggagccggacatatggttcacaccaggcctagtgctggagataaccggcgcggag
ataaccatgtccccactccacacttgttgctccgtcatgcttaagggtgacgtggggttg
gctataaggttcccaaggttcacaggtaggtataggactgataagaggccggaggatgca
acaacggttaaggagatatttgaaatgtacagtaatcagaagaaggttaagttaactgat
caagtgccttga

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