Colossoma macropomum (tambaqui): 118819004
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Entry
118819004 CDS
T09004
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao04510
Focal adhesion
cmao04512
ECM-receptor interaction
cmao04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118819004 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118819004 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118819004 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cmao00535
]
118819004 (col9a1a)
Proteoglycans [BR:
cmao00535
]
Extracellular matrix (ECM) proteoglycans
Others
118819004 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118819004
NCBI-ProteinID:
XP_036442485
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MLNARTFRASLLVVLLQIVLICSAQRGPPGPRGPPGPPGLVGFPGVDGIDGERGPGPGPD
GPPGPDGDDGKNGANGLPGSPGADGLTGPIGDHGPVGPIGPKGEPGAPGPRGRPGVGEDG
EAGADGEDGLPGELGKAGPPGSRGLRGPVGLPGLAGPRGPPGVWNGEELCPNACRSGLSG
YSGLPGMKGHKGVKGESGEPGRQGHKGEEGDQGDPGDPGAQGPPGPQGLRGITGIMGSKG
DRGSRGLDGNVGPQGIEGAPGDRGQRGKVGETGPKGTQGPRGLQGIIGLPGSKGEAGLPG
VDARDGIPGMPGVKGITGKVGSPGDVGPQGLPGLPGIPGAKGHSGPKGKSGDPGVAGPIG
NNGKTGERGEQGEVGPVGPRGGPGERGERGPDGPQGQPGPRGPKGNLGLPGLPGPAGFSG
QKGDRGAVGLTGPKGEQGPAGEEGTPGEKGDVGDEGEPGEKGSTGKPGDTGNRGPEGARG
QPGLEGPLGEPGPRGMQGDRGAPGLVGAQGRPGRGPTDQHIKQVCMRVMQEQLAQLAASL
RRPESGIAGLPGPPGPPGPQGPAGENGFPGHPGARGLPGLKGPPGLLGHKGPKGDTGDRG
DRGPTVQGPKGIPGPPGLPGEPGQPAYGSDGRDGMRGPRGVPGIPGVPGPPGPPGLNGYC
ESSQCVLQAIAAPQYAKESNMKGPDSF
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgctgaacgccaggactttccgggcgtccctgctggtggttttactgcaaatagtcctt
atctgctccgctcagaggggcccgcctggtccgagagggccacctggccctccaggactt
gttggctttcctggtgtcgatggcatcgatggagaaaggggtccagggcctggaccagat
ggccctccaggcccggatggagatgatgggaaaaacggggctaatggactaccaggaagc
ccaggagcagatggtttgactggacctattggagatcatggtccagttggtcctattggg
ccaaaaggtgaacctggtgcacctgggcctagaggaagacctggtgttggagaggatgga
gaagctggtgcggatggagaggatggactgccaggagaattaggcaaagcaggacctcca
ggaagccgtgggctgagagggccagtgggtcttccaggactagctgggccaagaggtccc
cctggggtttggaatggtgaggaattgtgtccgaatgcctgcagaagtggactttcaggc
tatagtggactaccaggtatgaagggccacaaaggtgtcaaaggtgaatctggcgaacca
ggaagacaaggccataagggtgaagagggagaccagggagaccctggagatcctggagca
caaggaccaccgggtccacagggactgaggggaataaccggcattatgggttctaaaggt
gataggggttctcgtgggttagatggaaacgtgggtcctcaagggattgaaggcgcccct
ggtgatcgagggcaaagaggaaaagtgggcgagactggaccaaaaggaactcaaggacct
cggggacttcaaggcattataggcttacctggatctaaaggagaagctggtttaccagga
gtggatgctcgtgatggcatcccaggaatgccaggggttaagggtatcactggaaaagtg
ggctcccctggcgatgtcggccctcaaggcctcccaggtttgccaggtattccaggggca
aagggccatagtggaccgaagggaaaatctggcgatccaggtgtggcaggaccgattggg
aacaatggaaaaacaggagaacgtggtgaacagggagaggtgggaccagtaggaccaaga
ggtgggccaggtgagagaggagagaggggtccagatgggcctcaaggacagccaggtcca
aggggacctaaaggaaatcttggcctacctggtcttcctggaccagctggtttttctggt
cagaaaggcgacaggggagcagttggtctcactggtccaaaaggcgagcaaggaccagct
ggtgaggagggtaccccaggagagaaaggagacgtaggtgatgagggagaaccaggcgag
aaaggatcgacaggaaaaccaggtgacacaggaaacagagggccagagggggcgcgtggg
cagcctgggcttgagggcccgctgggcgagccgggtccaagaggcatgcagggagaccgt
ggtgcacctggtttagttggagcacaaggaagaccaggtcgaggaccaacagatcaacac
atcaagcaggtctgcatgagggtaatgcaagagcagcttgctcagcttgcagccagtctg
aggaggccagagtccggcattgctggactgccaggtcctcctggccctcctggaccccaa
gggcctgctggagaaaacggcttcccaggacaccctggagcaagagggttaccagggctt
aaaggacctcctggccttctgggacataaaggacctaaaggtgacacaggagacagggga
gacagagggcctacagtacaagggcctaaaggcatacctggacctccaggacttccaggt
gagcctggccagccagcatatggcagcgatggtcgtgacggtatgagagggcctcgtggt
gtacctggaatacctggagttccaggacctcctggccctcctggccttaatggatactgt
gagtcatcccagtgtgttctccaggccatcgctgcaccacagtatgccaaagagtccaac
atgaagggaccagacagcttttaa
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