Colossoma macropomum (tambaqui): 118821636
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Entry
118821636 CDS
T09004
Symbol
prdm1b
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
cmao
Colossoma macropomum (tambaqui)
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cmao03000
]
118821636 (prdm1b)
Transcription factors [BR:
cmao03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
118821636 (prdm1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
zf-C2H2_6
zf-C2H2_jaz
zf-met
T3SS_ExsE
zf-MYST
Motif
Other DBs
NCBI-GeneID:
118821636
NCBI-ProteinID:
XP_036446234
LinkDB
All DBs
Position
Unknown
AA seq
695 aa
AA seq
DB search
MKLEASLGDMSEWREVDFALNCTYIVHDQASEPSFSLPRAMTSIPRNLTFQYGPDNEVTG
VFSKEYIPQGTRFGPLQGDVYTKDSVPPQANRKYFWRIYSSGQLHHFIDGYDVQRSNWMR
FVNPARSLAEQNLVACQNGCDIFFYTIRPVEPDQELLVWYSPEFSQRLCGHAPSQPDSLK
TKHLGGDVMEADLQKHYLPQWTCCPKRGPSPHRPQSRDEAKKEEKEAEEKVDVEVIERDT
PPDTPDQHVMDFSKKVQPEVPKASRPDLSPQTFGVHQDLPLHLHGLYGYRERPVTYPPLP
PPRPLQPPYQLLPPYSPHYSRLLLPPYSPPYPPVLPPRGPFRYNNVLGNDALPFPPATQP
GLLPVSMPYPAPPPHGGLKERPPNTSPPQGAPATPELSPLSKLSSPEPQLVLQQPPSACE
EAINLSLAAATKNSSSSSSSSRHAPGYKSLPYPLKKQNGKIKYECNVCFKTFGQLSNLKV
HLRVHNGERPFQCPLCKKSFTQLAHLQKHHLVHTGEKPHECQVCHKRFSSTSNLKTHLRL
HSGEKPYQCKLCSTKFTQYIHLKLHRRMHGSACEQAHRCPLCCQAFLHRFSLELHRRSGS
CPATATRPQSPELRRTAELLEHFDSSTEANGLDETAPDAEVDAALERWLARNLAASPKED
SRVLKTMAAMGQQQERASVVQFCTPPRPSVKAEEE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgaagctggaagcatctcttggagacatgagcgagtggagggaggtggactttgccctc
aactgcacctacatcgtccatgaccaggcgtcggagcccagcttcagcctgcccagagcc
atgacctccatcccccgcaacctcaccttccagtatggcccagacaacgaggtgaccggc
gttttcagtaaagaatacatcccccaggggacgcgcttcggacccctgcagggcgacgtt
tacaccaaagacagcgttcctcctcaggccaacaggaaatacttctggagaatttattcc
agcggtcagcttcaccacttcattgacggctatgacgtccagcgcagcaactggatgcgc
ttcgtcaacccggcacgctctctggcagagcagaacctggtggcctgccagaacggctgc
gacatcttcttctacaccatccggcccgtggagcccgaccaggagctgctggtgtggtac
agccccgagttctcccagcggctgtgcggacacgcgccctcgcagccggacagcctgaag
accaagcatctgggtggcgacgtgatggaagctgacctccagaagcattacctacctcag
tggacctgctgccccaaacggggaccaagccctcacaggccccagagccgggacgaagcc
aaaaaggaggagaaggaggcagaggagaaggttgatgttgaggtcattgagagggataca
cctccagacacacctgaccagcacgtgatggacttcagtaagaaggttcagcccgaggtg
cccaaagcatcccgccctgatctgagcccccaaaccttcggcgtgcatcaggaccttcca
ctgcatcttcacggcctctacggctacagagagaggcccgtaacttaccctcctctgccc
cctccaagacctctacagcccccctaccagctcctgccaccttatagcccccattactcc
cgcctgctcctacccccgtactcccctccatatccccctgtgctgccccctagaggacca
ttccggtacaacaatgttctgggtaacgatgctttgccttttccaccagcaacccagccg
ggtcttctgcccgtcagcatgccctatcctgccccacctcctcatggtggcctgaaggag
agacccccaaacacctcccctccccaaggtgccccggccactcccgaactctcacccctg
tccaagctctcttcccctgagccgcagcttgttctgcagcagcccccatcggcctgtgaa
gaggccatcaacctcagcctggccgccgcaaccaaaaacagctcttcatcttcatcatcc
tcacggcatgcacccgggtacaagtccctcccctacccgctcaagaagcagaatgggaag
atcaagtatgagtgcaacgtctgcttcaagaccttcggccagctttccaacttgaaggtg
catttgagggtacacaacggagagaggccattccagtgtccgctgtgcaagaagagcttc
acccagctggcccacctgcagaagcaccatctcgtccacaccggagagaagcctcatgag
tgtcaggtgtgccacaagcgcttcagcagcaccagcaacctgaagacgcacctgcggctg
cactcgggagagaagccctaccagtgcaagctgtgcagcaccaagttcacgcagtacatt
cacctgaagctgcaccgccgcatgcacggctcagcgtgcgagcaggcccaccgctgcccg
ctctgctgccaggccttcctgcaccgcttcagtctggagctgcaccgccgctcgggcagc
tgcccggccaccgccacccgccctcagagccccgagctgcgcaggacggccgagctgctt
gagcactttgactccagcaccgaggccaacggcctggacgagaccgcaccggacgccgag
gtggacgcggcgctggaaaggtggctggccagaaacctggctgccagcccgaaggaagac
agcagggtcttgaagactatggctgccatggggcagcagcaggaaagggccagtgtggtg
cagttctgcaccccaccacgaccctcggtgaaggctgaagaagagtag
DBGET
integrated database retrieval system
