Cucurbita maxima (winter squash): 111468977
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Entry
111468977 CDS
T05246
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111468977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmax03041
]
111468977
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111468977
Spliceosome [BR:
cmax03041
]
Complex C
Other components
Step II factors
111468977
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
IBR
AAA_22
AAA_19
zf-RING_2
zf-RING_UBOX
ResIII
HA2_N
Arc_MA
ABC_tran
Helicase_RecD
AAA_29
nSTAND3
Motif
Other DBs
NCBI-GeneID:
111468977
NCBI-ProteinID:
XP_022969963
UniProt:
A0A6J1I2G6
LinkDB
All DBs
Position
Unknown
AA seq
1745 aa
AA seq
DB search
MKSSSSSSSSSSTTVFRPPDSSLTCNRPSYLQYLPRSPNGASRPGFPVKFHNCSGQRTSP
NRANFVIDLVLDHRGVAKCSVEVLMAKCNSKPDNFIVPQGGPVVAFLFFKQWVSALEAMV
TFWELRLDGLHDFTPILKPRINLPSDADELHDRLRNLFAERIQRLMDGEKVRDWQKKRDL
VKVQIDRISHSLRKPLGIATQFELKEKRKGLIVEKDSIMRNTEEFKSAMRYILDYVEGKK
LELSDSEDVGVFKFDETISWNRIHSLILRECRRLEDSLPMYSCRREILRQIHSQQVMVLI
GETGSGKSTQLVQFLADSGLSSSESIVCTQPRKISATSLAHRVREESRGCYDDDCISCYP
SFSSAQQFKSKIIYMTDHCLLQHYMNDKKLSDVSCIIIDEAHERSLNTDLLFALLKSLLM
VRVDLHLIIMSATANADQLSKYFFGCGIFHVPGRNFPVDIRYVPSLDEGSSGPCTVASYV
TDVVRMASEIHWKEKGGTILAFLTSQMEVEWACENFHAPGTVPLAFHGKQSFDEQFRVFQ
DHPGKRKVIFATNLAETSLTIPGVKYVIDPGWVKDSKFEPRNGMNILKVCRTSQSSANQR
AGRAGRTEPGRCYRLYSQSDFELMSPNHEPEIRKVHLGVAILRILALGVKNVDDFDFVDA
PSAEAVDMAIRNLVQLGAITLNSNVYELTNEGRNLVKLGIEPRLGKLILSCFNCRVRREG
VVLAVLMTNASSIFCRVGKVEDKLKSDCQKVQFCHPDGDLFTLLSVYKQYEALPRERKNQ
WCWENSINAKTMRRCQDAILELERCLKQELNIIIPSYWLWSSLKPTDHDRNLKKCILASL
SENVAMFTGYDRLGYEVAMTGRHVQLHPSCSLLIFSEKPKWVVFGEILSISNEYLVCVTA
IDVDALSTISPPPLFDISLMEKHRLEVRTLSGFGKTLLKRVCGKSNSNLISLTSHVRKVF
SDDCIGIEVNINQNEILLFSRSENMDAVYHFVNDILEYERKYLWNECMEKCLYHGNDGSP
PVALLGSGAKIRHLELEKRYLTVDVFRSNVDSIDDKELFMSLEKSVSGTICTIQKVPCSG
QDDDDKERGHRITFLTPDAAEKALKLDGGFFCGSLVKIIPMRITAGCDNKLFSFPPVKAK
VFWPRRLSKGFAVVKCNSYDVSFLVNDFSNLLNGERFLRCEPSIKYNDCVTLSGIDKELS
EADIFNVLRSATDRKILDLFLVRENPVSNPPVNACEEALLKEISAFMPKSHPHVKCCYVQ
VFQPQPKDFYMRAAITFDGRLHLEAAKALEYLEGKALPVCFPWQKIKCQQLFHSTLSCTI
PIFRVIKCQLNSLLESLKKIDGAECTLSQNINGSYRVKLSANATKTVAELRRPVEALLRG
KIIDHASLTPTVLQHLNSRDGFDLINLLQRENEVYILVDRQRLSLRIFGASENVAAAERK
LIQSLQTLHERKQLEIHLRGKSRPPNLLKTVVEKFGPDLNGLKQKFPEAGFTLNTRHHIL
SVHGSKDLKHDVETIIYELEKTSGGLAERPDDADACSICLCDIEDDRFELEACGHHFCRQ
CLVEQFESAIKNHGSFPVCCAKQTCQSPILLTDMRYLLSNEKLEELFRASLGAFVAGDSA
YRFCPSPDCPSVYRVASPDTCGEPFMCGACFSETCTRCHLEYHPFLSCEQYRVFKEDPDS
SLDEWRKGRENVKNCPVCGYTIEKIEGCNHIECKCGRHICWVCLDYFGSSDECYGHLRSI
HMAFV
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcctcctcctcctcctcctcctcctcctccaccaccgtcttcaggccgccggat
tcttccctcacatgtaatcgaccttcctatttacagtacctgccgcgttctccgaacgga
gcttccaggccaggttttcctgtgaaatttcataattgttctggacaacgaacttcccct
aaccgcgcaaattttgttattgatctcgtcttggatcatcgcggcgttgccaagtgctct
gttgaggttttaatggccaaatgcaattccaagccggacaattttattgtccctcagggt
ggtcctgttgttgcgtttttgtttttcaagcaatgggttagtgcgcttgaggctatggtg
acgttttgggaattgcgcctcgatgggcttcatgatttcactccgattcttaaacctagg
atcaatttgccctctgatgctgacgaactccatgaccgacttcggaacctctttgctgaa
agaatacagcgtcttatggatggcgaaaaggtccgagattggcaaaagaaacgcgatctt
gttaaggttcagattgatcgaatttctcatagcctacggaagccccttggtattgccact
cagtttgaactcaaagaaaagaggaaggggcttattgtcgagaaggattcaattatgagg
aacacggaagagtttaagtctgctatgcgttatattctggattatgtggaaggaaagaaa
ctggaactatcagatagcgaagacgtgggagtttttaaatttgacgaaacaattagctgg
aaccgaattcatagcttgattttgagagaatgccgcaggcttgaggatagtttgcccatg
tattcttgccgccgggaaatccttcggcaaattcacagtcaacaggtaatggtattgatt
ggagaaactggttcaggaaagagcacacagttggttcaatttcttgctgattcgggactt
tcttcttctgagtcaattgtatgtacacagcctcgcaagatatctgctacctcccttgcc
catagggtgagagaagaaagccgtgggtgttatgatgatgattgtataagttgttatcca
tcattttcatctgctcaacagttcaaatctaagataatatacatgacagaccactgttta
ctgcagcactacatgaatgataagaaactttctgatgtttcctgcattataattgacgag
gctcatgaaagaagcctgaatactgatctcctttttgcattactgaaaagtttactcatg
gtgagagttgatttgcatcttattattatgtctgcaacagccaatgcagatcagctatca
aagtacttctttggttgtggaatctttcatgtaccggggaggaactttcctgttgatatt
agatatgttccttctttggatgaaggctcttctggtccttgcactgttgcttcatatgtt
acggatgttgtaagaatggcatcagagattcactggaaagaaaagggagggactattctt
gcctttttgacttctcagatggaagtggaatgggcatgcgaaaattttcatgctcccggt
acagttcccttggcatttcatgggaagcaatcctttgatgagcaatttcgagttttccag
gaccaccctggtaaaagaaaggtaatttttgccacaaatcttgcagagacatcattgaca
attcctggggtgaagtatgttatagatcctggttgggtgaaagatagcaaatttgaacct
agaaatggtatgaatatccttaaggtatgcagaaccagtcagagttctgctaatcagcga
gctggtcgtgctggtagaacagaacctggaagatgttatagactgtactcccagtctgac
tttgagttaatgtctcctaaccatgaacctgagattcgaaaagttcatcttggtgttgca
atattgagaattcttgccttgggtgtaaagaatgtagatgattttgactttgtagatgct
cccagtgcggaagctgttgacatggccatcaggaatctcgttcagttgggagctattaca
ctgaatagtaatgtttatgaactaacaaatgaaggtcgtaatttagtaaagttgggcatt
gagccacgccttggcaagttgattcttagttgcttcaattgtcgtgtacgtagagagggt
gttgtacttgctgttttaatgacaaatgctagtagtatattttgccgagttggtaaggtt
gaagataaattaaaatctgattgccagaaggttcaattttgccaccctgatggtgacctt
ttcactctgctctcagtttataaacaatatgaagccttgcctagggagaggaaaaaccaa
tggtgttgggagaacagcattaatgccaaaactatgagaagatgccaagatgccatcttg
gaattggaacgttgtctcaaacaagaacttaacattatcatcccaagttactggctttgg
agttcgctgaagcctacagatcatgacagaaatcttaaaaagtgtatacttgcttctctt
tctgaaaatgtggccatgttcactggttatgatcgactgggttacgaagtggcgatgact
ggacgacatgttcaactacatccatcatgttctttgctaatatttagtgagaagcccaaa
tgggtggtgtttggtgaaattttgtcaataagtaatgaatatttggtatgcgtaactgcc
attgatgtagatgctttgtctaccatttcccctccccctttgtttgacatttctcttatg
gagaaacacaggctggaggtacgaactcttagtggctttggcaaaactctgcttaaaagg
gtttgtggaaaaagcaacagtaatcttatttctcttacatcacatgttcgtaaagttttc
agtgatgactgcataggcattgaagtaaatataaatcagaatgagattctgttgttctca
agatcagagaacatggatgcggtttatcattttgtaaatgatattttggagtatgaaagg
aaatatttatggaatgaatgcatggagaaatgcttgtatcatggaaatgacggctcacct
cctgttgctttgttgggttctggtgctaaaataagacatctggaacttgagaagagatat
ttgactgttgatgtatttcgttcgaatgtggattccattgatgataaggaactttttatg
tctcttgagaaatctgtatctggtactatttgtactattcaaaaagttccatgttctgga
caggatgatgatgataaagaaagaggacatagaataacatttcttactcctgatgcagct
gaaaaagctttgaagctcgatggtggtttcttttgtggatccttggtgaagataattcct
atgcggatcactgctggatgtgataataaacttttctcttttcctcctgtcaaagctaaa
gtcttctggcctcgtaggttgagcaaaggatttgcagttgttaaatgtaacagttatgat
gtcagtttccttgttaatgatttctctaacctactgaatggagaaaggttcttacgttgt
gaacctagcataaagtacaatgactgtgttaccttaagtggaatcgacaaagagctttct
gaagctgatatttttaatgttctgaggtctgcaacagacaggaaaattttggatcttttt
cttgttcgggaaaatcctgttagcaatcctccagtcaatgcttgtgaagaagctcttctg
aaagaaatctctgcttttatgccgaaatcccaccctcatgtcaaatgttgctacgttcaa
gtttttcaacctcaacccaaggatttttacatgagagctgcaataacttttgatggaaga
ttgcacttggaggcagcaaaagccttggagtatttggaaggaaaagcactgccagtatgt
tttccatggcagaaaattaagtgccagcagctatttcatagcactttatcctgcaccatc
cccatatttcgagtgatcaaatgtcaactgaattccttacttgaaagcttgaagaagata
gatggtgcggaatgcactctttctcagaacatcaatggttcctaccgagtgaagctttct
gccaatgccacgaaaacagtagccgagctgagacgaccagtggaagcacttctgagaggg
aagattatagatcatgctagcctgactcctacagttcttcagcatctgaactctagagat
ggctttgatctaataaatttactacagcgggaaaatgaggtctacattctcgttgacagg
cagagacttagtctacgaatttttggtgcttctgagaacgtagctgcagctgagcgaaag
ttgattcaatccctacagacacttcatgagcgcaagcaacttgagattcaccttcgaggc
aaatctcggcctcccaatctcctgaagacagtggttgagaagttcggccccgatctcaat
ggccttaaacagaagtttccagaagctggatttacattaaatacccggcatcatatttta
tctgtccatggtagtaaagatttgaagcatgacgttgaaacaattatttatgagcttgaa
aagacgagtggtggtttagccgagaggcctgatgatgcagatgcttgttcaatttgctta
tgtgacattgaagacgacaggtttgaacttgaagcctgtggacaccatttttgccggcaa
tgccttgtggaacagtttgaatctgccatcaaaaaccatggaagcttcccagtttgttgt
gccaaacaaacatgtcaatctcccatattacttacagatatgagatatctgttgtcgaac
gagaagctggaggaactgtttcgagcttcattgggagcttttgttgctggtgacagtgcc
tatagattttgcccatcgcccgactgcccctcagtttaccgagtggccagtcccgataca
tgtggggaaccattcatgtgtggagcatgcttttcagaaacttgtactagatgccatttg
gagtatcatccattcctatcgtgcgaacagtaccgagtgttcaaggaagacccagattcg
tcactggacgagtggcgcaaaggtagagagaacgtcaagaactgccccgtctgtgggtac
acaattgagaagattgaagggtgtaaccacattgaatgcaagtgtggaaggcatatttgt
tgggtctgtttggattattttggtagcagtgacgaatgttatggtcatttgaggagcatt
catatggccttcgtttaa
DBGET
integrated database retrieval system
