Cucurbita maxima (winter squash): 111479352
Help
Entry
111479352 CDS
T05246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 50 isoform X1
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
cmax
Cucurbita maxima (winter squash)
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmax03041
]
111479352
03009 Ribosome biogenesis [BR:
cmax03009
]
111479352
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111479352
Spliceosome [BR:
cmax03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111479352
Ribosome biogenesis [BR:
cmax03009
]
Eukaryotic type
90S particles
Helicases
111479352
Pre-60S particles
111479352
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
CMS1
Helicase_C_2
F420_ligase
Motif
Other DBs
NCBI-GeneID:
111479352
NCBI-ProteinID:
XP_022979726
UniProt:
A0A6J1IRK9
LinkDB
All DBs
Position
Unknown
AA seq
649 aa
AA seq
DB search
MARAPIHTPANFLTSRSLEPCYLRRYGCLRPPFLSQTLRPVPASKLVIVRGCVIAGYARK
SVDSDGFDQLTDDNDFTVYSSHELPYDGDVTVDNEDIKNSGTPRRISIGRLGRLKSQKVK
AIVMKGSRTKEEVKDDVRVLTSGNGSPHISDRPHSKVKTPGEKKKVNTLRNVERFSRSSE
LQDKGRHHRTPPSLSRSEQSVPAASATHFRGWGSRGPYDSEYESTQPKQQKFSSEKGFYS
RKSFKDLGCTEYMIESLRRQNFLRPSQIQAKAFASVIEGKSCIISDQSGSGKTLAYLAPL
IQRLRQEELQGLQKPSSQSPQIVIIVPTAELASQVLSNCRSISKFGVPFRSMVVTGGFRQ
KTQLDNLQEGVDVLIATPGRLMLLINEGFLQLSNLRCAVMDEVDILFNDEDFEVALQTLM
KSAPVNAQYLFVTATLPVDIYNTLVEKFPDCEVIMGPGVHRISPSLEEVLVDCSGEDEQN
KTPDAAFLNKKDALLQIAEGTPVLKTIVFCNKIETCRRVENALQRFDKKGSRLQVFPFHA
ALARDSRLANMEAFTNSHSNQVSKFLVCTDRASRGIDFPNVDHVILFDFPRDPSEYVRRV
GRTARGATGKGKAFIFVVGKQVSLARRIIERNRKGHPLHDVPSAYELTY
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggccagggctcccattcacactccggccaactttctgacctctcgaagtctcgaaccg
tgctacttgagacgctatggctgcctccgcccgccatttctgagccagacgctacggcca
gttcccgcaagcaagctggtgattgttcgtggttgtgtaatcgccggttacgctcgcaag
tcggtggattctgatggatttgatcagctcactgatgataatgacttcaccgtatattcc
tcgcacgaattgccttacgatggagatgtgacagttgataatgaagatattaagaattca
ggaacaccgagaaggatatcaattggaagacttggaagattgaaatctcagaaagttaag
gcaattgtgatgaaaggttctaggacaaaggaagaagtaaaagatgatgttcgtgtactg
acttctggaaatggttcaccgcatatatccgatcgtccgcactctaaagttaaaactccg
ggagaaaagaagaaggtaaataccttaagaaatgtagaaagattttcaagatcatctgaa
ctgcaagataaaggtcgacatcacagaactccccccagtttatcaagatccgagcaatcg
gtcccggcagcttctgccactcacttcagaggatggggctctagagggccctacgattca
gagtatgaatcaacccaacctaaacaacagaagttttcctcagagaagggcttttatagc
cgaaagtcatttaaagatcttgggtgcactgaatatatgattgagtcattgaggaggcag
aatttcctacggccttcacagattcaggccaaggcatttgcatcagttattgaaggaaaa
agttgtatcatttctgatcaaagtggatctggtaagacattagcatatcttgcaccatta
atccagcgtctgaggcaggaggaacttcaaggacttcaaaaaccttcttcacaaagtccc
caaattgttatcattgtgccgactgcagaattggcttctcaggtcttaagtaattgccga
tccatttcaaaatttggggtgccatttaggtcaatggttgtgacaggcggtttccggcag
aaaactcaacttgataatctacaagaaggtgttgatgttctaatagcaactcctggtcgt
ttgatgcttctaataaatgaaggcttcttgcagttatcaaatctaagatgtgctgtaatg
gacgaggtagatatcctctttaatgatgaggattttgaagttgcattgcagactttaatg
aagtctgcacctgttaacgcacaatatctatttgtgactgcaactttacccgttgacata
tataatacattagtagaaaagtttcctgattgtgaagtgatcatgggacctggagttcac
cggataagtcctagtctggaagaggttcttgtagattgtagtggtgaagatgagcagaac
aagacaccggacgctgctttcttgaataagaaagacgcccttctgcagattgctgaagga
actccagtcttgaaaactattgttttctgtaacaagattgagacatgtagaagagttgaa
aatgcattgcaacgttttgataaaaaaggcagccgcttgcaagtttttccatttcatgct
gccctagcaagagactcacggcttgcaaatatggaggccttcaccaattctcattcaaac
caagtatccaagttcttggtttgtacagatagggcatcacgtggaattgattttccaaat
gtggatcatgtcatactcttcgacttccctcgtgatcctagcgagtatgttcgccgtgtt
ggaagaacggctagaggtgctacaggaaaaggaaaagcattcatcttcgtggttggaaag
caggtatcgcttgcacggaggataatcgaaagaaacaggaaaggtcatccgttgcatgat
gtgccatctgcttatgagcttacatactaa
DBGET
integrated database retrieval system
