Clavibacter nebraskensis: CMN_02036
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Entry
CMN_02036 CDS
T02530
Symbol
ligD
Name
(GenBank) Cmm ortholog CMM_2074; Cms ortholog CMS_1156 (pseudogene)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cmc
Clavibacter nebraskensis
Pathway
cmc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CMN_02036 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmc03400
]
CMN_02036 (ligD)
Enzymes [BR:
cmc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CMN_02036 (ligD)
DNA repair and recombination proteins [BR:
cmc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CMN_02036 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CCE75978
UniProt:
M5BA09
LinkDB
All DBs
Position
2144563..2147067
Genome browser
AA seq
834 aa
AA seq
DB search
MAGAKQQVEVEGRRITLTNLDKVLYPATGTTKGDVIAYYAAIAPHMIPHLRDRPVTRKRW
VDGVGTDEHPAKMFFQKDLDAHTPEWVLRRAIQHRDHANDYPLANDVATLTWLGQIAALE
LHVPQWRFGRTGDVRRPDRLVLDLDPGPGAGLPECVEVAKAARAILRDMGLEPYPVTSGS
KGIHLYAALDGSHDADAISEVAHELARALEADHPDLVVSDMRKALREGKVLVDWSQNNPA
KTTVAPYSLRGRSRPTVAVPRTWRELASPTLRHLELDEVVARMRTREDPLAPVEEGHRES
LEPTRERLAGFAHKDADAAGDRLATYRSKRDAAKTSEPVPADAPAPSDGSSFVIQEHHAR
ALHWDFRLEHDGVLVSWALPKGVPTEHGTNHLAVQTEDHPLEYGSFEGTIPAGEYGGGEV
TIWDAGTFELEKWRDGHEVIATLHGRGHGTGIDGPRRYALIHTGGHGKADANWLIHLMEP
ADAPAAHHPKPARPAALAKAGGRTRVGARRKGRAAFAAAPMLATAATGAGLDSDEEWAVE
MKWDGYRAIAAVADGRATITSRNGVDLTAAFPELADLPDQLAADAVLDGEIVVLGDGGRP
DFGLLQTRLGLTGEKDIARARKAAPVHLMLFDALAIGDRVLVGEPYRERRAALLDAVTSP
GRGRIQVPPAFDGDLDGALATSRELGLEGVVAKRVDAPYESGRRSSAWIKIKHHRAQEVV
VGGWRPGSGSRSSGIGSLLVGVPGPDGLMYAGRVGTGFTERDLADALRRFRPLARKTSPF
ADVPAAEARDAHWITPRLVGEVEFAEWTSTGRLRQASWRGWRHDKSPDEVVRED
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcgaagcagcaggtggaggtcgaggggcggcggatcacgctcacgaacctc
gacaaggtgctgtacccggccaccggcacgaccaagggcgacgtgatcgcctactacgcc
gccatcgcgccgcacatgatcccgcacctccgcgaccggcccgtgacgcggaagcggtgg
gtcgacggcgtcggcaccgacgagcacccggcgaagatgttcttccagaaggacctcgac
gcccacacgcccgagtgggtgctccgccgcgcgatccagcaccgcgaccacgccaacgac
tacccgctcgcgaacgacgtcgcgaccctcacctggctcgggcagatcgccgcgctggag
ctgcacgtgccgcagtggcgcttcggccgcacgggcgacgtgcgccggcccgaccggctg
gtgctcgacctcgacccgggccccggcgccggcctcccggagtgcgtcgaggtcgcgaag
gccgcgcgcgcgatcctccgcgacatgggcctcgagccgtacccggtgacgagcggatcc
aagggcatccacctctacgccgcgctcgacggcagccacgacgcggacgcgatctccgag
gtcgcgcacgagctcgcccgcgcgctcgaggccgaccaccccgacctcgtcgtgagcgac
atgaggaaggcgctccgcgagggcaaggtgctcgtcgactggagccagaacaaccccgcc
aagaccacggtcgcgccctactcgctgcgcgggcgctcccggccgaccgtcgccgtgccc
cgcacctggcgcgagctcgcgtcgccgacactccggcacctggagctggacgaggtggtc
gcgcggatgcggacgcgcgaggatccgctcgcccccgtcgaggagggccaccgcgagagc
ctcgagccgacgcgcgagcggctcgcgggattcgcgcacaaggacgcggacgccgccggc
gaccggctcgcgacctaccggtccaagcgcgacgccgcgaagacgagcgagcccgtgccc
gccgacgcgcccgcgcccagcgatggcagctccttcgtgatccaggagcaccacgcccgc
gcgctgcactgggacttccggctcgagcacgacggcgtgctcgtgagctgggccctcccc
aagggcgtgcccaccgagcacggcacgaaccacctcgcggtgcagaccgaggaccacccg
ctggagtacgggtccttcgagggcaccatccccgcgggcgagtacggcggcggcgaggtc
accatctgggacgcgggcaccttcgagctggagaagtggcgcgatgggcacgaggtcatc
gcgacgctgcacgggcgcggccacggcaccggcatcgacgggccgcgccgctacgcgctc
atccacacgggcgggcacgggaaggccgacgccaactggctgatccacctgatggagccg
gcggacgcgcccgccgcgcaccacccgaagcccgcgcgccccgccgcgctcgcgaaggcg
ggcggccgcacgcgcgtcggcgcccgccggaagggccgcgccgcattcgccgccgcgccc
atgctcgcgaccgccgccaccggcgccggcctcgactccgacgaggagtgggccgtcgag
atgaagtgggacggctaccgcgcgatcgccgccgtcgcggacggccgggcgaccatcacg
agccgcaacggcgtcgacctcaccgccgccttccccgagctcgccgatctgcccgaccag
ctcgccgccgacgcggtgctcgacggcgagatcgtggtgctgggcgacggcggccgcccc
gacttcggcctcctgcagacgcgcctcggcctcaccggcgagaaggacatcgcgcgtgcg
cggaaggccgcgcccgtgcacctcatgctcttcgacgcgctcgcgatcggcgaccgcgtg
ctcgtcggcgagccgtaccgggagcgccgcgccgcgctcctcgacgcggtcacgtcgccg
ggccgcggccggatccaggtcccgcccgcattcgacggcgacctcgacggggcgctcgcc
acgagccgtgagctcggcctcgagggcgtcgtcgccaagcgcgtcgacgcgccctacgag
tcgggccggcggtcgagcgcctggatcaagatcaagcaccatcgcgcgcaggaggtggtg
gtcggcggctggcgccccggatccggcagccggtcctccggcatcggctcgctgctcgtc
ggcgtccccggccccgacggcctgatgtacgcgggccgcgtcggcacgggcttcaccgag
cgcgacctcgccgacgccctgcgccggttccggccgctcgcgcggaagacgagccccttc
gccgacgtgcccgccgccgaggcccgcgacgcgcactggatcacgccccgcctcgtcggc
gaggtcgagttcgccgagtggacctccaccggccgcctccgccaggcgtcgtggcgcggc
tggcggcacgacaagtcgccggacgaggtcgtgcgcgaggactga
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