Cyanidioschyzon merolae: CYME_CMJ129C
Help
Entry
CYME_CMJ129C CDS
T00175
Name
(RefSeq) histone deacetylase
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03082
ATP-dependent chromatin remodeling
cme03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
CYME_CMJ129C
03083 Polycomb repressive complex
CYME_CMJ129C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cme03036
]
CYME_CMJ129C
Enzymes [BR:
cme01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
CYME_CMJ129C
Chromosome and associated proteins [BR:
cme03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
CYME_CMJ129C
HDAC complexes
Sin3A-HDAC complex
CYME_CMJ129C
BRAF-HDAC complex
CYME_CMJ129C
REST complex
CYME_CMJ129C
SHIP complex
CYME_CMJ129C
MiDAC complex
CYME_CMJ129C
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
CYME_CMJ129C
Heterochromatin formation proteins
Other heterochromatin formation proteins
CYME_CMJ129C
Chromatin remodeling factors
NuRD complex
CYME_CMJ129C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
16994193
NCBI-ProteinID:
XP_005534865
UniProt:
M1VHC9
LinkDB
All DBs
Position
10:complement(join(361470..362443,362686..362998))
Genome browser
AA seq
428 aa
AA seq
DB search
MKAEAGTSESRVGTLEAFPSRVAYFYDHDVGNYYYALGHPMKPHRMRMVHELLIAYGVHE
KLQVLQPPRATERDLTRFHSDEYIEFLRRITPETAQKQLDQLQRFGLFEDSPCFDDIYRF
CQISAGGSLAGAARLNRGFCDVAINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHAR
VLYCDIDVHHGDGVEEAFYTTNRVMTCSFHKFGNFFPGTGDVRDIGYGPGRHYALNFPLQ
DGIDDVCYREIFAPIMSRVMEWYQPTAVVLQCGADSLSGDRLGCFNLSLDGHAQCVRFFQ
RYGVQLMLLGGGGYTIRNVARCWAYETALAAGVVLDDMIPYNPYYEYYGPDFRLRIRPSN
MENLNTPSYLHRMMVQLLESLRSLPHTPSVPFHSVPADVISDPLLRKFSAPVPLSDDEHS
VCSSDWDD
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcggaggctggcacgtccgagtcgcgcgtcggcacgcttgaggctttcccgtcc
cgcgtggcgtacttttacgaccatgacgtcggcaactactattacgctttgggacatcca
atgaaaccccatagaatgcgaatggttcacgagcttcttattgcttacggagttcacgag
aaactgcaggtactgcaaccgcctcgcgcaacggagcgagatctgacgcgcttccactcc
gacgagtacatcgagttcttgcggcgcatcaccccggaaaccgcacagaagcagctggac
caattgcagaggtttggcttgtttgaggattccccctgttttgatgacatctatcgcttt
tgccagataagcgccggcggctccctagctggtgctgcccgcctgaaccgcggtttctgc
gacgtggctatcaactggtcaggcggactgcatcacgcgaagaaaagtgaagcttccggt
ttctgttacgtcaatgactgcgtgctggcgattttagagttgctcaagcatcacgcccgc
gttctatactgtgacatcgacgtacatcatggcgacggcgtcgaggaggcgttctacacg
accaaccgggtgatgacgtgctctttccacaaattcgggaacttttttcctggtaccggc
gatgtgcgagacattggatacggccctggaagacactacgcactcaatttcccattgcag
gacggtatcgacgatgtctgctatcgcgaaatctttgctccgatcatgtccagagtgatg
gaatggtatcagccgaccgcagtcgtgctccaatgcggggccgactccctcagtggcgat
cgtctgggttgcttcaacctgtcgctggacggacacgcgcagtgcgtacgtttcttccaa
cgctacggcgtccagttgatgctgctgggtggcggcggctataccattcgcaacgtggcg
cgatgttgggcgtatgaaacggcgctcgcagccggtgtcgttctcgatgacatgataccc
tacaacccatactatgagtactatggaccggattttcgattgcgaattcgaccaagcaat
atggagaacctgaacacgccgagttacttgcatcgaatgatggtgcagttgctcgaaagt
ttgcgatcgcttccgcacacaccaagcgttcccttccattcggtcccggccgacgtcatc
agcgatccgttgctgcgaaagttctcagctccggtacctctcagcgatgacgagcattcc
gtctgcagttcagactgggatgattag
DBGET
integrated database retrieval system