KEGG   Cyanidioschyzon merolae: CYME_CMJ129C
Entry
CYME_CMJ129C      CDS       T00175                                 
Name
(RefSeq) histone deacetylase
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03082  ATP-dependent chromatin remodeling
cme03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    CYME_CMJ129C
   03083 Polycomb repressive complex
    CYME_CMJ129C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cme03036]
    CYME_CMJ129C
Enzymes [BR:cme01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     CYME_CMJ129C
Chromosome and associated proteins [BR:cme03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     CYME_CMJ129C
   HDAC complexes
    Sin3A-HDAC complex
     CYME_CMJ129C
    BRAF-HDAC complex
     CYME_CMJ129C
    REST complex
     CYME_CMJ129C
    SHIP complex
     CYME_CMJ129C
    MiDAC complex
     CYME_CMJ129C
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     CYME_CMJ129C
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    CYME_CMJ129C
  Chromatin remodeling factors
   NuRD complex
    CYME_CMJ129C
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 16994193
NCBI-ProteinID: XP_005534865
UniProt: M1VHC9
LinkDB
Position
10:complement(join(361470..362443,362686..362998))
AA seq 428 aa
MKAEAGTSESRVGTLEAFPSRVAYFYDHDVGNYYYALGHPMKPHRMRMVHELLIAYGVHE
KLQVLQPPRATERDLTRFHSDEYIEFLRRITPETAQKQLDQLQRFGLFEDSPCFDDIYRF
CQISAGGSLAGAARLNRGFCDVAINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHAR
VLYCDIDVHHGDGVEEAFYTTNRVMTCSFHKFGNFFPGTGDVRDIGYGPGRHYALNFPLQ
DGIDDVCYREIFAPIMSRVMEWYQPTAVVLQCGADSLSGDRLGCFNLSLDGHAQCVRFFQ
RYGVQLMLLGGGGYTIRNVARCWAYETALAAGVVLDDMIPYNPYYEYYGPDFRLRIRPSN
MENLNTPSYLHRMMVQLLESLRSLPHTPSVPFHSVPADVISDPLLRKFSAPVPLSDDEHS
VCSSDWDD
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgaaagcggaggctggcacgtccgagtcgcgcgtcggcacgcttgaggctttcccgtcc
cgcgtggcgtacttttacgaccatgacgtcggcaactactattacgctttgggacatcca
atgaaaccccatagaatgcgaatggttcacgagcttcttattgcttacggagttcacgag
aaactgcaggtactgcaaccgcctcgcgcaacggagcgagatctgacgcgcttccactcc
gacgagtacatcgagttcttgcggcgcatcaccccggaaaccgcacagaagcagctggac
caattgcagaggtttggcttgtttgaggattccccctgttttgatgacatctatcgcttt
tgccagataagcgccggcggctccctagctggtgctgcccgcctgaaccgcggtttctgc
gacgtggctatcaactggtcaggcggactgcatcacgcgaagaaaagtgaagcttccggt
ttctgttacgtcaatgactgcgtgctggcgattttagagttgctcaagcatcacgcccgc
gttctatactgtgacatcgacgtacatcatggcgacggcgtcgaggaggcgttctacacg
accaaccgggtgatgacgtgctctttccacaaattcgggaacttttttcctggtaccggc
gatgtgcgagacattggatacggccctggaagacactacgcactcaatttcccattgcag
gacggtatcgacgatgtctgctatcgcgaaatctttgctccgatcatgtccagagtgatg
gaatggtatcagccgaccgcagtcgtgctccaatgcggggccgactccctcagtggcgat
cgtctgggttgcttcaacctgtcgctggacggacacgcgcagtgcgtacgtttcttccaa
cgctacggcgtccagttgatgctgctgggtggcggcggctataccattcgcaacgtggcg
cgatgttgggcgtatgaaacggcgctcgcagccggtgtcgttctcgatgacatgataccc
tacaacccatactatgagtactatggaccggattttcgattgcgaattcgaccaagcaat
atggagaacctgaacacgccgagttacttgcatcgaatgatggtgcagttgctcgaaagt
ttgcgatcgcttccgcacacaccaagcgttcccttccattcggtcccggccgacgtcatc
agcgatccgttgctgcgaaagttctcagctccggtacctctcagcgatgacgagcattcc
gtctgcagttcagactgggatgattag

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