Cyanidioschyzon merolae: CYME_CMQ221C
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Entry
CYME_CMQ221C CDS
T00175
Name
(RefSeq) probable polyadenylation factor I subunit 2 Pfs2p
KO
K15542
polyadenylation factor subunit 2
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CYME_CMQ221C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMQ221C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CYME_CMQ221C
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
PROPPIN
Motif
Other DBs
NCBI-GeneID:
16996643
NCBI-ProteinID:
XP_005538147
UniProt:
M1UVQ1
LinkDB
All DBs
Position
17:557160..558617
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AA seq
485 aa
AA seq
DB search
MQNRSDVSQIPEDRRVRYVVQKQTEIFDGKRLRRAMVRKTVDLQAPAARWLLDRTWQQDS
RQGPPLEPSAEYIYRLQPPCAAAFRERPITNACTHFVQHAQNKQKCGINACCWTPEGRRL
ITGATSGEFTLWNGWTFNFETILLAHNLAVRNITWSHDGKFMVSTDQSGIVKYWQSNLNH
LKVFRAHQETIRDLAIAPTDQKLATCSDDQTIRVFDFESPARAGEIQGSPERILRGHGWD
VRSVDWHPTRGLLASGSKDSLIKLWDPKSGKCLTTIHAHKNAVVKVRWNPSNANYLLSGS
RDQTVKLIDIRMMRSVQSFHGHRREVTTLAWHPIQEDTFVSAGYDGSLFFWVLGDPEPAA
VIPNAHATQVWDLSWHPLGHVLVSSGNDTYTRFWTRSRPGDGMRDRYQRSSCRWEHVKLY
ATEDDPLVREVEELEALQGNGGVDGFGESLLDRHVMMVKRQRTTAAQRPPPGLEYVQNDV
QMTKS
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaccgcagcgatgtttcacagatccccgaagacaggcgcgtgcgttatgtcgtt
cagaagcagaccgaaattttcgatggaaagcgcctccgtcgggcgatggttcggaagaca
gtggacttgcaggcgcctgcagctcgctggttgctggaccgtacctggcagcaagacagt
cgtcagggaccgccgctggagccctcagctgaatacatctatcggctgcaaccaccctgt
gctgcggcgtttcgagaacggccgataaccaacgcctgtacgcactttgtgcagcacgcg
cagaacaagcaaaagtgcgggataaacgcctgctgctggacgccggaaggccgtcgactc
atcacgggcgctacgagcggcgagtttacactctggaatggttggacttttaactttgag
acgatactattggcccataatctggcggtgcgcaatattacctggagccatgacggcaag
ttcatggtctcaaccgaccagtctggcattgtaaagtactggcagagcaacctcaaccat
ctgaaggtatttcgagcgcatcaagagacaatacgggacttggccatagccccaacggat
cagaaactagcgacttgttcggacgaccagacgatccgggtgttcgactttgagtcgccc
gctcgagcgggtgagatccagggctcccccgagcgcatcctgcgcggacacggctgggat
gtgcgctctgtggactggcacccaacgcgcggcctccttgcgtctggtagcaaggactct
ctgatcaaattgtgggaccccaaatcaggcaagtgcctaacgacgatccatgcgcataag
aatgcagttgtgaaagtgcggtggaaccccagcaatgcgaattacctgctgagcggctcg
cgtgaccaaaccgtcaagttgatcgatattcggatgatgcgatctgtgcagagttttcat
ggacatcgtcgcgaggtaacgacgctggcctggcatcccatccaggaggatactttcgtg
tcggctggctacgacggttcgctgttcttctgggtgcttggcgatcctgagccggcggca
gtcatcccgaacgcccatgcgacccaggtttgggacctctcttggcatccgttggggcac
gtgctcgtaagctccggcaacgatacgtacacccggttctggactcggtcgcggccagga
gacggcatgcgcgatcgctaccagcgcagcagttgtcgctgggagcacgtcaagctgtac
gcgactgaagatgatccgcttgtgcgcgaggttgaagagcttgaagcccttcaaggcaac
ggcggggtcgatggcttcggggaatctctcctcgaccgacacgttatgatggtgaagcgc
cagcggacgactgctgctcagcgacctcctccaggtctggaatacgtccagaatgacgtg
cagatgaccaagagttga
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