Clavibacter michiganensis subsp. insidiosus: VO01_09615
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Entry
VO01_09615 CDS
T03862
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cmh
Clavibacter michiganensis subsp. insidiosus
Pathway
cmh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VO01_09615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmh03400
]
VO01_09615
Enzymes [BR:
cmh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VO01_09615
DNA repair and recombination proteins [BR:
cmh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VO01_09615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
FUSC
Motif
Other DBs
NCBI-ProteinID:
AJW79348
UniProt:
A0A0D5CI80
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All DBs
Position
2020521..2023031
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AA seq
836 aa
AA seq
DB search
MAGAKQQVEVEGRRITLTNLDKVLYPATGTTKGDVIAYYAAVAPHMLPHLRDRPVTRKRW
VDGVGTDEAPGKMFFQKDLDAHTPDWVQRRAIQHRDHANDYPLVGDVATLTWLGQIAALE
LHVPQWRFGRTGDERRPDRLVLDLDPGPGAGLPECVEVATAARAILRDMGLEPYPVTSGS
KGIHLYAALDGSHDADAISEVAHELARALEADHPDLVVSDMRKALRQGKVLVDWSQNNPN
KTTVAPYSLRGRSRPTVAVPRTWRELASPTLRHLELDEVVARMRKREDPLAPVEAGHRES
LEPTRERLAGFARREPSDAADDRLATYRSKRDAAKTSEPVPADAPAPSDGRSFVIQEHHA
RALHWDFRLEHDGVLVSWALPKGVPTEHGTNHLAVQTEDHPLEYGSFEGTIPAGEYGGGE
VTIWDAGTFDLEKWRDGKEVIATLHGRGDGTGIDGPRRYALIHTGGHGKADANWLIHLME
PADAPAAHHPKPARPAALAKAGGRTRVGARRKGGAASAPAPMLATAATGAGLDPDEEWAV
EMKWDGYRAITVVADGRATITSRNGVDLTAAFPELAELPDQLAVDAAVLDGEIVVLGDGG
RPDFGLLQTRLGLTGEKEIARARKAAPVHLMLFDALAIGDRVLVDEPYRERRAALLDAVR
APGRGRIQVPPAFDGDLDGALATSRELGLEGVVAKRVDAPYESGRRSSAWLKIKHHRAQE
VVVGGWRPGPGSRSSGIGSLLVGVPGPDGLMYAGRVGTGLTERDLADALRRFRPLARKTS
PFADVPAADARDAHWITPRLVGEVEFAEWTSTGRLRQASWRGWRHDKSPDEVVRED
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcgaagcagcaggtggaggtcgaggggcggcggatcacgctcacgaacctc
gacaaggtgctgtacccggccaccggaacgaccaagggcgacgtcatcgcgtactacgcc
gccgtcgcgccgcacatgctcccgcacctccgcgaccggcccgtgacccgcaagcgctgg
gtcgacggcgtcggcaccgacgaggcgccggggaagatgttcttccagaaggacctcgac
gcgcacacgcccgactgggtgcagcggcgggcgatccagcaccgcgaccacgcgaacgac
tacccgctcgtcggcgacgtcgcgacgctcacctggctcgggcagatcgcggcgctcgag
ctgcacgtgccgcagtggcggttcggccgcacgggcgacgagcggcggcccgaccggctc
gtgctcgacctcgacccgggcccgggcgccggcctccccgagtgcgtcgaggtcgcgacg
gcggcccgcgcgatcctccgcgacatgggcctcgagccgtacccggtgacgagcgggtcc
aagggcatccacctgtacgccgccctcgacggcagccacgacgcggacgcgatctccgag
gtcgcgcacgagctggcgcgcgcgctcgaggccgaccatcccgacctcgtcgtgagcgac
atgaggaaggcgctgcggcagggcaaggtgctcgtcgactggagccagaacaaccccaac
aagacgacggtggcgccgtactcgctgcgcgggcgctcccggccgacggtcgccgtgccg
cgcacctggcgcgagctcgcgtcgccgacgctccggcacctggagctggacgaggtggtc
gcgcggatgcggaagcgcgaggatccgctcgcccccgtcgaggcgggccaccgcgagagc
ctggagccgacgcgcgagcggctcgcgggcttcgcgcggagggagccgtccgacgccgcc
gacgaccggctcgcgacctaccggtcgaagcgcgacgccgcgaagacgagcgagcccgtt
cccgccgacgcgcccgcgcccagcgatggccgctccttcgtgatccaggagcaccacgcc
cgcgcgctgcactgggacttccggctcgagcacgacggcgtgctcgtgagctgggccctc
cccaagggcgtgcccaccgagcacggcacgaaccacctcgcggtgcagaccgaggaccac
ccgctggagtacgggtccttcgagggcacgatccccgcgggcgagtacggcggcggcgag
gtcaccatctgggacgcgggcaccttcgatctggagaagtggcgcgatggcaaggaggtc
atcgccacgctgcacgggcggggcgacggcaccggcatcgacgggccgcgacggtacgcg
ctcatccacacgggcgggcacgggaaggccgacgcgaactggctgatccacctgatggag
cccgcggacgcgcccgccgcgcaccacccgaagcctgcgcgccccgcagcgctcgcgaag
gcgggcggccgcacgcgcgtcggcgcgcggcggaagggcggcgccgcatccgcccccgcg
cccatgctcgccaccgccgccaccggcgccggcctcgaccccgacgaggagtgggccgtc
gagatgaagtgggacggctaccgtgcgatcaccgtcgtcgcggacggccgggcgaccatc
acgagccgcaacggcgtcgacctcacggccgccttccccgagctcgccgagctgcccgac
cagctcgccgtcgacgccgcggtgctcgacggcgagatcgtggtgctgggcgacggcggc
cgccccgacttcggcctcctgcagacgcgcctcggcctcacgggcgagaaggagatcgcg
cgtgcccggaaggccgcgcccgtgcacctcatgctcttcgacgcgctcgcgatcggcgac
cgcgtgctcgttgacgagccgtaccgggagcgccgtgccgccctcctcgacgcggtccgg
gcgccgggccgcggccggatccaggtgccgcccgcgttcgacggcgacctcgacggagcg
ctcgccacgagccgcgagctcggcctcgagggcgtcgtcgccaagcgcgtcgacgcgccc
tacgagtcgggccgccggtcgagcgcctggctcaagatcaagcaccaccgcgcgcaggag
gtggtggtcggcggctggcgccccggacccggcagccggtcctccggcatcggctcgctg
ctcgtcggcgtccccggccccgacggcctcatgtacgcgggccgcgtcggcacgggcctc
accgagcgcgacctcgccgacgccctccgccgcttccgcccgctcgcgcggaagacgagc
cccttcgccgacgtgcccgccgccgacgcccgcgacgcgcactggatcaccccgcgtctc
gtcggcgaggtcgagttcgccgagtggacctccacgggccgcctccgccaggcgtcgtgg
cgcgggtggcggcacgacaagtcgcccgacgaggtcgtgcgcgaggactga
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