Clavibacter michiganensis subsp. michiganensis: CMM_1663
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Entry
CMM_1663 CDS
T00529
Name
(GenBank) putative ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmi03016
]
CMM_1663
Enzymes [BR:
cmi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CMM_1663
Transfer RNA biogenesis [BR:
cmi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CMM_1663
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
CAN01715
UniProt:
A5CRK6
LinkDB
All DBs
Position
complement(1885441..1886931)
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AA seq
496 aa
AA seq
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MTAPSDTPDPDATGGDAPVPSTPAGLSRPAMGPSLFSDVPGSTATDAVVARSRTGTRRTA
AAPAAQPAPGSASGDTPALARVAETDAPAPKPLREAAATGDLTVIDTREEYLRAVEAIAA
GTGPIAVDAERASGFRYSQRAYLIQVFRRGAGTFLFDPPAVGGFSELDAVIRDVEWVLHA
ASQDLACLREVGLDPQRIFDTELASRLLGLPRVGLGTVVEELLGIHLAKEHSAADWSTRP
LPRAWLVYAALDVELLVDVRDEIARRLEEQGKTGIAEQEFAATIAKEAKPARVEPWRRLS
GLHGVRGGRNLAVAKELWEARDAYAREVDTSPGRLVPDGSLVAVARVLPQTKRDLAAVRE
FSGRASRSEIDRWWAAVERGLAATEFPQLRGTGETMPPPKAWADKDPAADRRLKRARVAV
QEVATAMGVPQENLLTPEVLRRVAWTPPDDLAPEAVATALESWGARPWQVEATAAPVAAA
FVDAGQADDVTDDGAS
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgccccgtccgacacccccgaccccgacgcgaccggcggcgatgctcccgtcccg
tcgactcccgccggcctgagccgcccggccatgggcccgtccctgttctccgacgtgccg
ggatcaaccgccaccgacgcggtcgtcgcccggagccggacgggcacccggcggaccgcg
gccgccccggcggcccagccggcgcccggctccgcgtccggcgacacgcccgccctggcg
cgggtcgcggagaccgacgcccccgcgcccaagcccctccgtgaggccgccgcgacaggc
gacctcaccgtcatcgacacccgggaggagtacctccgcgccgtcgaggcgatcgcggcc
ggcaccggtcccatcgcggtcgacgccgagcgcgcgtcgggcttccgctacagccagcgt
gcgtacctcatccaggtgttccgccgcggggccggcacgttcctcttcgacccgcccgcg
gtgggcggcttctcggagctcgacgccgtgatccgcgacgtcgagtgggtgctgcacgcc
gcgagccaggacctcgcctgcctccgcgaggtgggcctcgacccgcagcgcatcttcgac
accgagctcgcctcgcgactcctcggcctgccccgcgtgggcctgggcacggtcgtggag
gagctgctcgggatccacctggccaaggagcactcggccgccgactggtcgacccgcccg
ctcccccgcgcctggctcgtctacgccgcgctcgacgtggagctgctcgtcgacgtgcgc
gacgagatcgcccgccgcctcgaggagcagggcaagaccggcatcgccgagcaggagttc
gccgcgaccatcgccaaggaggcgaagcccgcgcgggtggagccgtggcgtcgtctgagc
ggcctgcacggggtccgcggcggccgcaacctcgcggtcgcgaaggagctgtgggaggcc
cgcgacgcctacgcgcgcgaggtcgacacgagccccggacgcctcgtccccgacgggtcg
ctcgtcgcggtcgcgcgcgtcctgccgcagaccaagcgcgacctcgccgcggtgcgcgag
ttctcgggccgcgcgagccgcagcgagatcgaccgctggtgggccgccgtggagcggggc
ctcgccgcgaccgagttcccgcagctgcgcggcacgggcgagaccatgccgccgccgaag
gcgtgggccgacaaggaccccgccgccgaccgccgactcaagcgcgcccgcgtcgccgtc
caggaggtcgcgaccgcgatgggcgtgccgcaggagaacctgctcacgcccgaggtgctg
cgtcgcgtcgcgtggacgccgcccgacgacctcgcgcccgaggccgtcgcgacggccctc
gagtcctggggtgcgcgcccctggcaggtcgaggcgacggccgctccggtggcggcggcc
tttgtcgatgccggccaagccgacgacgtgaccgacgacggggcctcgtag
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