Clavibacter michiganensis subsp. michiganensis: CMM_2074
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Entry
CMM_2074 CDS
T00529
Name
(GenBank) conserved hypothetical protein/ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Pathway
cmi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CMM_2074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmi03400
]
CMM_2074
Enzymes [BR:
cmi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CMM_2074
DNA repair and recombination proteins [BR:
cmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CMM_2074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CAN02137
UniProt:
A5CSR6
LinkDB
All DBs
Position
2338121..2340619
Genome browser
AA seq
832 aa
AA seq
DB search
MEVDGHRIALTNLDKVLYPATGTTKGDVIAYYAAIAPHMLPHLRDRPVTRKRWVDGVGTD
EAPGKMFFQKDLDAHTPEWVQRRAIQHRDHANDYPLVGDVATLTWLGQIAALELHVPQWR
FGRTGDERRPDRLVLDLDPGPGAGLPECVEVAKAARAILRDMGLEPYPVTSGSKGIHLYA
ALDGSHDASRVSEVAHELARALEADHPDLVVSDMKKALREGKVLVDWSQNNPNKTTVAPY
SLRGRSRPTVAVPRTWRELSSPTLLHLELDEVIARMRRRADPLAPVEEGHRESLEPTRER
LAGFARKEPAADADGADDRLATYRSKRDAAKTSEPVPAESPAPSEGSTFVIQEHHARALH
WDFRLEHDGVLVSWALPKGVPTEHGTNHLAVQTEDHPLEYGSFEGTIPAGEYGGGEVTIW
DAGTFELEKWRDGEEVIATLHGRGDGTGIDGPRRYALIHTGGHGKVDANWLIHLMEPADA
PATARAKPTRPASLEKAGGRTRVGARRKGGAASAPAPMLATAATAAGLDADEEWAVEMKW
DGYRAIAVVADGRATITSRNGVDLTPAFPELADLPDSLDVDAAVLDGEIVVLGDGGHPDF
GLLQTRLGLTGEKEIARARKAAPVHLMLFDALAIGDRVLVEEPYRDRRAALLDAVRSPGR
GRIQVPPAFDGDLGGALATSRELGLEGVVAKRVDAPYESGRRSSAWIKIKHHRAQEVVVG
GWRPGSGSRASGIGSLLVGVPGPDGLEYAGRVGTGFTERDLADALRRFGPLARKTSPFAD
VPAADARDAHWITPRLVGEVEFAEWTSTGRLRQASWRGWRHDKSSDEVVRED
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
gtggaggtcgacgggcaccggatcgcgctcacgaacctcgacaaggtgctgtacccggcg
accggcacgaccaagggcgacgtcatcgcctactacgcggccatcgcgccgcacatgctg
ccgcacctccgcgaccggcccgtgacccgcaagcgctgggtcgacggcgtgggcaccgac
gaggcgccggggaagatgttcttccagaaggacctcgacgcgcacacgccggagtgggtg
cagcggcgggcgatccagcacagggaccacgcgaacgactacccgctcgtcggggacgtc
gcgacgctcacctggctcgggcagatcgcggcgctcgagctgcacgtgccgcagtggcgg
ttcggccgcacgggcgacgagcggcgccccgaccggctcgtgctggacctcgacccgggc
ccgggcgccggcctccccgagtgcgtggaggtcgcgaaggccgcacgggcgatcctccgc
gacatgggcctcgagccgtaccccgtgacgagcgggtccaagggcatccacctctacgcc
gcgctcgacggcagccacgacgcctctcgcgtctccgaggtcgcgcacgagctggcccgc
gccctcgaggccgaccaccccgatctcgtcgtgagcgacatgaagaaggcgctgcgcgag
ggcaaggtgctcgtcgactggagccagaacaacccgaacaagacgaccgtcgcgccctac
tcgctgcgcggccgctcccggccgaccgtcgcggtgccgcgcacctggcgggagctgtcg
tcgccgacgctcctgcacctggagctggacgaggtgatcgcgcggatgcgcaggcgcgcg
gatccgctcgcccccgtcgaggagggccaccgcgagagcctggagccgacgcgggagcgg
ctcgcgggcttcgcgcggaaggagcccgccgccgacgcggacggcgccgacgaccggctc
gcgacctaccggtccaagcgcgacgccgcgaagaccagcgagccggtgcccgcggagtcc
cccgcgccctcggagggcagcaccttcgtgatccaggagcaccacgcccgcgcgctgcac
tgggacttccggctcgagcacgacggcgtgctcgtgagctgggccctccccaagggcgtg
cccaccgagcacggcacgaaccacctcgcggtgcagaccgaggaccacccgctcgagtac
ggatccttcgagggcacgatccccgcgggcgagtacggcggcggcgaggtcaccatctgg
gacgcgggcaccttcgagctggagaagtggcgcgacggcgaggaggtcatcgcgacgctg
cacggccgcggcgacggcaccggcatcgacgggccgcgacggtacgcgctcatccacacg
ggcggccacggcaaggtcgacgcgaactggctcatccacctgatggagccggcggacgcg
cccgcgacggcgcgcgcgaagccgacccgccccgcatcgctcgagaaggcgggcggccgc
acgcgcgtcggcgcgcggcggaagggcggcgccgcgtccgcccccgcgcccatgctcgcc
acggccgcgaccgccgccggcctcgacgccgacgaggagtgggcggtcgagatgaagtgg
gacggctaccgcgccatcgccgtcgtcgccgacggccgggcgaccatcacgagccgcaac
ggcgtcgacctcacgcccgccttccccgagctcgccgacctgcccgactccctcgacgtc
gacgccgccgtgctcgacggcgagatcgtggtgctgggcgacggcggccaccccgacttc
ggactcctgcagacgcgcctcgggctcacgggcgagaaggagatcgcgcgcgcccggaag
gccgcgcccgtgcacctcatgctcttcgacgcgctcgcgatcggcgaccgcgtgctcgtc
gaggagccctaccgggatcgccgtgccgcgctcctcgacgccgtccggtcgccgggccgc
gggcggatccaggtcccgcccgccttcgacggcgacctcggcggggcgctcgccaccagc
cgggagctcggcctcgagggcgtcgtcgccaagcgcgtcgacgcgccctacgagtcgggc
cggcggtcgagcgcctggatcaagatcaagcaccaccgggcgcaggaggtcgtggtcggg
ggctggcggcccggatccggcagccgggcatccggcatcggctcgctgctggtcggcgtc
cccggccccgacggcctggagtacgcgggccgcgtcggcacgggcttcaccgagcgcgac
ctcgccgacgcgctccgccgcttcggcccgctcgcgcggaagacgagcccgttcgcggac
gtgcccgccgccgacgcccgcgacgcgcactggatcaccccgcgtctcgtcggcgaggtc
gagttcgccgagtggacctcgacgggccgcctccgccaggcgtcgtggcgcggctggcgg
cacgacaagtcatccgacgaggtcgtccgcgaggactga
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