Callorhinchus milii (elephant shark): 103176050
Help
Entry
103176050 CDS
T03088
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk04120
Ubiquitin mediated proteolysis
cmk04137
Mitophagy - animal
cmk04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103176050 (prkn)
04120 Ubiquitin mediated proteolysis
103176050 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
103176050 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cmk04131
]
103176050 (prkn)
04121 Ubiquitin system [BR:
cmk04121
]
103176050 (prkn)
03029 Mitochondrial biogenesis [BR:
cmk03029
]
103176050 (prkn)
Enzymes [BR:
cmk01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
103176050 (prkn)
Membrane trafficking [BR:
cmk04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
103176050 (prkn)
Aggrephagy
Other aggrephagy associated proteins
103176050 (prkn)
Xenophagy
Other xenophagy associated proteins
103176050 (prkn)
Ubiquitin system [BR:
cmk04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
103176050 (prkn)
Mitochondrial biogenesis [BR:
cmk03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
103176050 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Rad60-SLD_2
Dsc3_N
Crinkler
Motif
Other DBs
NCBI-GeneID:
103176050
NCBI-ProteinID:
XP_007887627
LinkDB
All DBs
Position
Unknown
AA seq
462 aa
AA seq
DB search
MIVFVRFNSSHGFPVELDANASILQLKEAVAKRQEVPADQLRVIFAGKELSNDLTLQNCD
MIQQSTVHVVQSISNPIQSSASNSGSGILERRNGNEVISLTQVDLSTSVFSGQSTGLADI
HDIGDHTPSTQTGSSGSTHYKSFYVYCKNLCKAIQPGKLRVRCSKCQQGTLTLTRDPSCW
EDVLVRNRLMGVCQAQDCDGTVAEFYFKCGAHPTSDSDTSVVLNLITPNRQHVPCITCTD
TGDPVLVFPCADCHVICLDCFRLYCMTRLNDRQFIHDPQLGYTLPCVAGCPDSAIKELHH
FRILGNHQYDRYQRYGAEEYVLCMRGVLCPSPGCGAGLLPDAGVRRIECLQQDGVGCGFV
FCRECKEEYHEGQCCVLRVRERAPEQQAYVVDPQAAQLARWEEASRQTIEQTTKPCPKCH
VPVEKHGGCMHMKCPRSSCLFQWCWLCGMEWNRDCMGDHWFG
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtttgttaggttcaattcaagccatggattcccagtggagcttgatgcaaat
gccagcatcctccagcttaaggaggcagttgctaagagacaagaagttccagctgaccag
ttacgcgtgatctttgctggaaaggagctgagcaatgacctgacactgcagaactgtgac
atgatccagcaaagtactgttcatgtggtacaaagcatttccaacccaatccaaagttca
gctagtaattcaggcagtgggattcttgagaggaggaatggaaatgaagtgatcagctta
actcaagtggacctcagcacttctgtgttttctggacaatctacaggtcttgctgacatc
cacgatataggagaccatactccctccacccagactggaagttcaggctcaacacattac
aaaagtttttacgtgtactgcaagaacttgtgcaaagctatacaacctggcaaattgagg
gtgcgatgcagcaagtgtcagcaggggaccttgactttaaccagggacccatcctgctgg
gaagatgtgctggttagaaaccggttgatgggtgtatgtcaagcacaggattgtgatgga
actgtggctgagttctacttcaaatgtggagcacacccaacctctgacagtgatacatca
gtggttttgaacctaattaccccaaacaggcagcacgtgccctgtataacttgtactgat
actggtgatccagtgttggtgtttccttgtgcagactgccacgtcatatgtctagattgt
tttcgtttatactgtatgacacgactgaatgatcgccagtttattcacgatccacagctt
ggatatactctgccctgcgtggctggttgcccagactcagcgattaaagagctgcatcat
ttccgaattctcgggaaccaccagtatgatcgctaccagcgctatggagcagaggaatat
gtgctatgtatgagaggagtgctgtgtccgagcccaggctgcggagctggtctgcttcca
gatgcaggtgtgcgaaggatagagtgcctacagcaagatggagttggctgcgggtttgtc
ttctgccgtgaatgcaaggaagaataccacgaggggcagtgttgtgtacttcgtgtgagg
gagagagctccagaacagcaggcttatgttgttgaccctcaggctgctcagctagctcgc
tgggaagaggcttcaaggcaaacaattgagcagacaaccaagccttgtcccaaatgccat
gtgccagtggagaaacatggaggatgcatgcacatgaaatgccccagatcgtcttgcctg
tttcaatggtgctggctgtgcggcatggaatggaaccgtgactgcatgggagaccactgg
tttgggtaa
DBGET
integrated database retrieval system
