Callorhinchus milii (elephant shark): 103181005
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Entry
103181005 CDS
T03088
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor, RNA polymerase I, subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmk03021
]
103181005 (taf1c)
Transcription machinery [BR:
cmk03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
103181005 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Keratin_B2_2
Motif
Other DBs
NCBI-GeneID:
103181005
NCBI-ProteinID:
XP_042187844
LinkDB
All DBs
Position
Unknown
AA seq
1367 aa
AA seq
DB search
MTQIHEGRCKRRRGYVMTRIHEGRCKWRRGYVMTRIHEGRCKRRRGYVMTLDHEGSMRRR
DDVAAAPRPGVLCAPHMDNAFPHSLFPGFYNSGPSSGADAEAATVLQAFGDWGSHEQIQP
LHPPAGERQQQQQAGERKWVALRSLARESWDPLEPVAVPLLPPNAVCKFQPASLEDLSYV
GNVMKSRENNELAMRALNFPEQMAYFFIEHRDDAFRSMGKLLEESFYFGDCILRGRARDK
TISVNFLTTFTERVKQRQCPISNNTPRARLSSHLFGESMFDIPPTLLAENVHEEMNFQRN
QLLFNHSATGGALVYWPFSEGSSCEEGCLMYPSTDLMSSLNFRKIKLDFDDDEVPKLNAK
FNKPASVSLNGRINQIACSEVDQEVFVGVRSDYCCGAWKLSKSMKPSPLQVVQVENVATC
VNVSPHLPGELVIASECGTAYLWNVDKGLQRIRKETENLNFNAQLPWRWCDFTAHPRVYL
YADRTGLDLTDVRAGESCNQTLFKMGATASCQRGERVILPKHLQDVHPFHYLITTQYSAY
IIDERFPIVPVLKWRHMMGSPPMFAQVVSGASRNETHKIVLGTQRTQEALLLQYSGGTRL
PCQSFGPPQKLSSNYDMLKQLPVKLFLRQEAVITERLHSPGAGIAAFYHRRGRNSLSVIQ
LSAAGDLFYQTLVPRKNGCDDGNPTKERVGNDSEPISPTLNNGVLSEDPSGHGDPEEVGG
GEGKRSEGASPPLRADKEGTPTLSSQSTRKPPLSRAALVTCRRWLKSFVNKQKELNTNSK
VLPKHCFINVKHKFSCKNSDESGDAYKEVRDRIKSVMEKREILSHSTFPILDPVSVPDPV
DPSVWKDDLSDRLTAAWEEKWSEWWSEKLGMNHDKRIKVLQAKRKNEKSARARHRRGLSG
SFTSSVSEFSDFTDASIWSRTSTENLKESDYLSDTESHTLLNRSTTVSRANGSIVLEQEE
EVQTSAPEAEGSQKSVLDPGPSLEIQLRSMPRERKGILQKYMDALEDNPPQPEQDDEMSY
FLPIATSSQIPLMSTPHVNTNCEAFGPLPSGSQPLPSGSQPLPSGSQPLPSGSQPLPSGS
QPLSSGSQPLSSGSQPLPSGSQPLPSGSQPLPSGRQPLPSRRQPLPSRRQPLPSRRQPLP
SRRQPLPSRRQPLPSGRQPLPSGSQPLPSGSLPSGSQPSGSLPSGSQPSGSQPSGSQPSG
SQPSGSQPSGSQPLPSGSQPLPSRSQPLPSRSQPLPSRSQPLPSRSQPLPSRSQPLPSRS
QPLPSRSQPLPSRSQPLPSQKHPLASHSQTLPSLSQSLLSPSQPSSSLSQSLLSPSQPLP
SQNQALASQNQSLFSQSQSLPSLSQSVLSLSQSVLSQPKKKRARMGF
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagatccatgagggcaggtgtaagcggcggcgtggctacgtgatgacgcggatc
catgagggcaggtgtaagtggcggcgtggctacgtgatgacgcgaatccatgagggcagg
tgtaagcggcggcgtggctacgtgatgacgttagaccacgaggggagtatgcggcggcgt
gatgacgttgctgcggcgccccgacctggagtgttgtgcgctccccacatggacaacgcg
tttcctcactcgctgttccccgggttttacaactccggtccctcgagcggcgccgacgcc
gaggccgcgacagtcctccaggcgttcggggactggggctcccacgagcagatccaaccg
ctccacccgcccgccggggagcggcagcagcagcagcaggcaggagagcggaaatgggta
gccctgagaagcctggctcgggagagttgggatccgctggagccagtggctgttccgcta
cttcctccaaacgcagtctgcaagtttcaacctgcatccctggaagacctctcttatgtc
gggaatgtaatgaaaagccgggaaaacaacgagcttgcaatgcgtgcactgaacttccca
gagcagatggcttacttctttattgaacaccgtgacgatgccttcaggtcaatgggtaaa
cttttggaagagagcttttatttcggagactgcattctcaggggaagagccagggataag
acaataagtgtaaatttcctgacaacgttcacagaaagagtgaaacagaggcaatgccca
atatctaataacactccccgagcaagactttcaagtcatttgttcggtgagtccatgttt
gatattccaccaactttactggcagaaaacgttcacgaagaaatgaacttccaaagaaac
caacttctgttcaatcactctgccactggtggtgctctcgtgtactggccgttttctgaa
ggatccagctgtgaagaagggtgcctgatgtatcccagcaccgacttgatgagctccctc
aacttccgcaagatcaaattagattttgatgatgatgaagtgccaaagttaaatgcaaag
tttaataagccagcctccgtcagcttgaatggtaggatcaatcaaatcgcctgcagtgag
gtggaccaggaagtgtttgtaggtgttcggtcggactattgttgtggagcatggaaactg
tccaagagcatgaaaccttctcctctccaggtagttcaagtggagaatgtagctacctgt
gtgaatgttagtcctcaccttccaggagagttggtgattgccagcgagtgtggaactgct
tacctctggaatgtagacaaagggcttcagaggattcgaaaggaaaccgagaatctcaac
ttcaatgcccaactgccttggagatggtgtgatttcacagctcacccacgggtgtattta
tacgctgacagaaccggccttgatctgactgacgtgagggctggcgagtcctgtaaccag
acgctgtttaagatgggagctactgcgtcctgccagcgaggggaacgagtgatacttcct
aaacacctacaggatgtgcatccatttcattacctcatcaccacccagtattctgcctac
atcatagatgaacgattccctattgtccccgttctgaagtggaggcacatgatggggtcg
cctccaatgttcgcccaagttgtgagcggggcatcgaggaacgaaactcacaagattgtc
ctggggacgcagcgcactcaggaagcactgcttctgcagtattcaggaggtacacggctt
ccctgccagtcctttggtccaccacagaaactctccagcaattacgatatgttgaagcag
cttccggtcaagttatttctgaggcaagaagcagtcattactgagagacttcactctccg
ggggcaggtattgcagcattttatcatcgtcgcgggagaaattcactttctgtgattcag
ctgtctgcagcgggagatctcttttaccaaactctcgttcctcggaagaatggttgcgat
gacggaaatccaacgaaggagagggtcggaaatgacagtgaacctattagtcctactctg
aacaatggggtactctcagaggatccttctgggcacggagatccagaagaggttggagga
ggggagggcaaaagatcagagggagcctccccgccactcagagcagacaaagaaggaact
ccaacactgagcagccagagtaccagaaaaccaccactcagtcgtgctgctcttgtcaca
tgtcgcaggtggctgaagtcatttgtaaacaagcagaaagaacttaatacaaactctaaa
gtgctgcccaaacactgtttcataaacgtcaagcataagttttcctgcaaaaacagcgat
gaatcgggcgacgcatacaaggaggtgagggatagaattaaaagtgttatggagaagaga
gagatcctttcccacagcacgttcccaatattggacccggttagcgttccagaccctgtt
gatccctcagtttggaaagatgatctgagcgacaggctcacagcagcttgggaggagaag
tggagcgaatggtggtcagagaagcttggcatgaaccacgataagagaattaaagtgcta
caggcgaaaagaaagaatgaaaaatcagctcgagcgagacacagaagggggctgtcaggc
agcttcacctcatcggtgtctgagttttccgacttcactgacgcctcaatctggagcaga
acctcgacagagaatctcaaggagagcgattatctgtccgacacagaaagtcacaccctt
ctcaataggtccactacagtgagccgagcaaacggaagtattgtccttgagcaagaagag
gaggtgcagaccagtgcgcccgaagcagaaggaagccagaaatccgtattggacccaggg
ccctccctagaaattcagttgagatccatgcccagggaacggaaaggaattctacagaaa
tacatggatgccttggaagacaatccacctcaacccgagcaggacgatgaaatgagctac
tttttaccaatagcaacctcttcccaaatcccattgatgtctactccacacgtaaatacc
aattgtgaagcattcgggcccctgccctctggcagccagcccctgccctctggcagccag
cccctgccctctggcagccagcccctgccctctggcagccagcccctgccctctggcagc
cagcccctgtcctctggcagccagcccctgtcctctggcagccagcccctgccctctggc
agccagcccctgccctctggcagccagcccctgccctctggccgccagcccctgccctct
cgccgccagcccctgccctctcgccgccagcccctgccctctcgccgccagcccctgccc
tctcgccgccagcccctgccctctcgccgccagcccctgccctctggccgccagcccctg
ccctctggcagccagcccctgccctctggcagcctgccctctggcagccagccctctggc
agcctgccctctggcagccagccctctggcagccagccctctggcagccagccctctggc
agccagccctctggcagccagccctctggcagccagcccctgccctctggcagccagccc
ctgccctctcgcagccagcccctgccctctcgcagccagcccctgccctctcgcagccag
cccctgccctctcgcagccagcccctgccctctcgcagccagcccctgccctctcgcagc
cagcccctgccctctcgcagccagcccctgccctctcgcagccagcccctgccctctcag
aaacacccactagcctctcacagccagactttgccctcgctgagccagtcactgctctct
ccgagccagccctcgtcctcgctgagccagtcactgctctcccccagccagcctttgccc
tctcagaatcaggccttggcctctcagaaccagtccctgttctctcagagccagtctttg
ccatctctaagccaatccgtgctgtctctgagccagtctgtgctctctcaaccaaaaaag
aaaagagccagaatgggtttttaa
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