Callorhinchus milii (elephant shark): 103185309
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Entry
103185309 CDS
T03088
Symbol
cpsf6
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03015
mRNA surveillance pathway
cmk03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103185309 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
103185309 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmk03019
]
103185309 (cpsf6)
Messenger RNA biogenesis [BR:
cmk03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
103185309 (cpsf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
103185309
NCBI-ProteinID:
XP_007901917
UniProt:
A0A4W3K6K9
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All DBs
Position
Unknown
AA seq
572 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQESEYSGHDQIDLYDDVISPSANNGDAPEDRDYMDSLPQSV
TDDGGKSSNSMGPNIVYTYTGKRIALYIGNLTWWTTDEDLTEALHSMGISDVLEIKFFEN
RANGQSKGFALICVGSEASSKKLLDMLPKRDMHGQNPIVTPCNKQSLSQFEMQSRKSTQS
GQMSGEGKAGPPGASSRLAFSQSGRGRGRFPPNGPGGDRFPGPPGPGGPPPFPAPFTRGS
VPERLIHHIFSGQGPPRPPLGPPGPPGPPGPPPPGQGLPPPLGGPPNRGDRPPPPVMFPG
QPFGQPPXGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPIGPPINLAPPP
PHLPGPPPGAPPPAPHVNPAFFPPPANSVVPSSDSRGPPPSDPYGRPPPYDRGDYGPAGR
DMDSSRTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKV
SADDRCKVLISSLQDCLHGIESKSYGSGSRKRERSRERDHSRSREKSRRHKERSRSRDRH
DDYYRERSRERERHRDRDRDRERDREREYRHR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggcgtggatcacatcgacatctacgccgatgtcggcgaggagtttaaccag
gagtctgaatacagtggacatgatcagatagatttgtatgatgatgttatatcaccatct
gccaataatggagatgcaccagaagatcgtgattatatggacagccttccacagtctgtt
acagatgatggtggaaagtcttccaattctatgggcccaaacattgtctatacctacact
gggaagagaatagctttgtatattggaaatctgacatggtggaccaccgatgaggatttg
acagaagctcttcattctatgggaataagtgatgttttagagattaagttttttgaaaac
cgggcaaatggacagtcaaaagggtttgcactcatttgcgtgggatctgaagcatcctct
aagaagctgctggatatgcttcccaagcgagatatgcatggacagaatcccattgtcacg
ccatgcaacaaacaatccctcagtcagtttgaaatgcagtctagaaaatctactcagtct
gggcagatgtcgggggaaggcaaagctgggcctcctggagccagtagtcgcttagcattt
tcccaaagtggaaggggacgtggccgttttccaccaaatggtcctggtggggacagattt
ccagggcctcctggtccgggagggcctccaccttttcctgcacccttcacgcggggtagc
gtcccggagcgcttgattcaccacattttttctgggcaaggtccaccacggccacctcta
ggtcctcctggcccaccaggccctccagggccgcctccacccggtcaaggccttcctcct
ccactaggcggcccaccgaatcgtggtgatcgcccaccacccccagttatgtttccaggg
cagccgtttgggcaaccacctntaggacctctccctcctggtcctccacctccagtccca
ggatatggtcctcctcctggcccccctcctcctcagcaaggtccccctccaccacctggc
cctttcccaccacgtcctccaggtccaattggtcctccaattaacttggccccccctcct
ccacatcttcctggtcctcctccaggggcaccacctccagcccctcatgtcaatcctgcc
tttttcccaccaccagccaatagtgttgttccttcctctgacagtcgtggaccccctcca
tcagatccatatggacgtcctccaccatatgaccgaggggactatgggcctgctggcaga
gatatggattcctcaagaactccactgagtgaagcagaatttgaagaaataatgaatcga
aacagagccatttctagcagtgcaatatcaagggccgtgtccgatgctagtgcaggtgat
tacggaagtgctattgagactctggttactgctatttctttgattaagcagtcaaaagta
tctgctgatgatcgttgcaaagttctcataagttccctacaggattgtcttcatggaata
gagtcaaaatcgtatggttctgggtcaagaaaacgtgaacgctcacgagagagagaccac
agcaggtcacgagaaaaaagcagacgtcacaaagagcgctcacggagtcgtgatcgacat
gatgattattaccgagaaagaagtagagagcgggaaaggcatcgcgatcgtgatcgagac
cgagagagggacagagaacgagagtatcgtcatcgttaa
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