Cucurbita moschata (crookneck pumpkin): 111434661
Help
Entry
111434661 CDS
T05248
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03015
mRNA surveillance pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111434661
09123 Folding, sorting and degradation
03018 RNA degradation
111434661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111434661
03041 Spliceosome [BR:
cmos03041
]
111434661
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111434661
mRNA cycle factors
Stress granule specific factors
111434661
Spliceosome [BR:
cmos03041
]
Complex C
Other components
Complex C specific factors
111434661
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
RRM_3
Nup35_RRM
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
111434661
NCBI-ProteinID:
XP_022927898
UniProt:
A0A6J1EMB9
LinkDB
All DBs
Position
Unknown
AA seq
645 aa
AA seq
DB search
MAQVPSPPQVPGADPAANGQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLT
TRRSLGYGYVNYSSPVDATRALDALNFTPLNGNPIRVMFSHRDPSVRKSGSGNIFIKNLD
KAIDHKALHDTFSAFGSILSCKVATDASGQSKGFGFVQFDKEEAALKAIEKLNGMLLNDK
QVFVGPFVRKQERESVSEKTKFNNVFVKNLSETTSDEDLQNMFEEFGPITSVVVMRDGDG
KSKCFGFVNFENADDAARSVEELNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAA
DKYQGTNLYVKNLDDSIDDDKLKELFSAFGTITSYKVMRDPNGVSRGSGFVAFSTPEEAA
RALGEMNGRIIVSKPLYVALAQRKEDRRARLQAQFSQLQPMAMASSVAPRGMPMYPPGAP
GIGQQIFYGQAPPAIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQPGQQGQRSGGRR
AGAIQQTQQPGPMMQQQMLPRGRVYRYPPGRGMPDLPMPGVAGGMFSVPYEMGGMPPRDT
VHPQPIPVGALASALANAAPDHQRTMLGENLYPLVEQLEVDNAAKVTGMLLEMDQTEVLH
LLESPEALKAKVAEAMEVLRTVGQQTGNPAADQLASLSLSDNLDA
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttccatctccacctcaagttcccggtgccgatccagcggccaatggacag
catgtcacgacgtcgttgtatgttggagatcttgacgtgaatgtcaccgattcgcagctc
tatgatctttttaatcaggtggggcaggttgtttctgttagggtttgcagggatttgacg
acccgccgatcgcttggttatggctatgtcaattacagcagccctgtggatgcaacaagg
gcattagatgcgctaaacttcacccctttgaatggaaatcctataagggttatgttttcg
catcgtgaccctagcgtgcggaaaagtgggtctggaaatatttttatcaagaatttggac
aaggcaattgatcacaaagcgttgcatgatacattttctgcatttggaagcattttatcc
tgcaaggttgctacggatgcatccgggcagtctaaaggctttggttttgtgcaatttgat
aaggaggaagctgccttaaaagccatagagaagttgaatggaatgctgctaaatgacaag
caggtgtttgtgggaccttttgttcgcaagcaagaacgagaaagtgtcagtgagaaaaca
aagtttaataatgtttttgttaagaatctgtcggaaactacatctgatgaagatttacag
aatatgtttgaggagtttggaccaataaccagtgttgtggtgatgagggatggggatgga
aaatccaaatgctttggctttgtaaactttgagaatgcggacgatgctgcgaggtctgtt
gaagaacttaatggaaagaaggttgatgggaaagagtggtatgttggaaaagcccagaag
aaatctgaaagggaagttgaattgaaaaatcggtttgagcagagtgtaaaagaagctgct
gacaagtatcaaggtacaaacctatatgttaagaatttagatgatagcattgacgatgat
aaactgaaggagttattctctgcgtttggaaccattacctcatacaaggttatgcgagac
cctaacggagtgagcagaggttctggatttgttgcattctcaactcctgaagaagctgct
agagctcttggagagatgaatggaagaataattgtgagcaaacctctctatgttgcactc
gcgcagaggaaggaagataggagagcgaggttgcaggcacagttttcccaattgcagcca
atggcaatggcatcttcagttgcacctcgtggcatgccaatgtatcctccaggtgctccg
ggtatcggacaacaaatattctatggacaagctccgcctgctattatttcctcacagcct
ggctttggttatcagcagcaactcatgcctggaatgaggcctggtggaggtcccatgcca
aatttctttgtaccaatggttcagccgggccagcaagggcaaagatctggtggcagacgt
gctggtgccattcagcaaacccagcagcccggtccaatgatgcagcagcagatgctccca
cgaggacgtgtgtaccgttatcctcctggacgtggaatgcctgatcttcccatgcctgga
gttgcgggaggtatgttctctgttccatacgagatgggtggtatgcccccacgggatact
gttcaccctcaaccaattcctgttggtgctttggcttctgccctcgcaaatgcagctcca
gaccatcaacgaacgatgctgggggaaaatctgtatccactcgtggaacagctagaggtt
gataatgcagcaaaggtgaccggaatgctactggaaatggaccaaactgaggttctgcac
ttgctcgagtcgccggaggctctgaaagccaaggtggcggaggctatggaggttttgaga
accgtgggtcagcagacaggcaatccagcagctgatcaattggcttcactgtccctgagt
gacaaccttgatgcctaa
DBGET
integrated database retrieval system
