Cucurbita moschata (crookneck pumpkin): 111437428
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Entry
111437428 CDS
T05248
Name
(RefSeq) protein CHROMATIN REMODELING 8-like
KO
K10841
DNA excision repair protein ERCC-6
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
111437428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmos03036
]
111437428
03400 DNA repair and recombination proteins [BR:
cmos03400
]
111437428
Chromosome and associated proteins [BR:
cmos03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
111437428
DNA repair and recombination proteins [BR:
cmos03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
111437428
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
TFIIF_beta
Motif
Other DBs
NCBI-GeneID:
111437428
NCBI-ProteinID:
XP_022931170
UniProt:
A0A6J1EYQ6
LinkDB
All DBs
Position
Unknown
AA seq
1219 aa
AA seq
DB search
MEEEEDRIFLNSLGVTSANPEDIERDLLEKAKKNVEDGAETGGFAEENTGGKLGSAASSS
ASHVQLYQKLRAVEYEIGAVASTVEPVKKLERNEKHSHVGTDSHEHGREEDGVSASADDL
QHALAVDRLTSLKKTQQQLKKELSHLNDKHAETILEIVKDKSKPKRKSKEVKKSGNNGEK
RLKVVSFDEDDDFDAALDAATVGFVETERDELVRKGILTPFHKLKGFERRLQNPGQSRFQ
NLGQSRREVKEEEEENDDFASDSVARAIHSMSVAAQARPTTKLLGLEALPKLDPPTRPFY
RLKKYAKVPLSAEEKAAKKIKGKKTRRPLPDKKYRRRIALEERDEEATENLSDGLLTSSS
EREDSGDLEDDVPEPSSVTLDGGLKIPRSIFDQLFDYQKVGVQWLWELHCQRAGGIIGDE
MGLGKTVQVLAFLGALHFSNMYKPSIMICPVTLVRQWKREARKWCPGFLVEILHDSAHDP
SCRKMREKSDESDDSKDSEESDYRKNLLCKGTKKWDSLINRVLRSESGLLITTYEQLRLL
GEKLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMSGSPIQNKLSELWSLFDF
VFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVN
AHLPKKTEHVLFCSLTSEQRSVYRAFLASSEVESILDGNRNSLSGIDVMRKICNHPDLLE
REHSFQNPDYGNPERSGKMKVVEQVLKVWKEQGHRVLLFTQTQQMLDILERFLVGSSYTY
RRMDGGTPVKQRMALIDEFNNSSEVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDM
QARERAWRIGQQRDVTVYRLITRGTVEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMK
DLFTLHEDGEDGSTETSSIFSQLPDNVNVVGAQKNEKHEQKSGSGSALFADSADEKPSKS
EIETPGRNGSSVEMGQAGGTDVDTGILKSLFDAHGIHSAVNHDVIANADDGEKMHLEEQA
SQVARRAAEALRQSRMLRSNESISVPTWTGRAGTAGGPSSVRRKFGSTVNSLVNSNSKCS
AIPRNGASHLNGCIAAGASSGKALSSAELLAKIRGNQERALGAGLEHLPQPAPSSTPNNV
RGANVGPSFRVQPEVLIRQMCTFVQQRGGTTDSVSIVQHFKDRIPPNDLPLFKNLLKEIA
ILEKSPSGSFWALKPEYKQ
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaggaggatcggatttttctgaacagcttgggtgtgacatctgctaatccg
gaggatatagagcgggacttgttagagaaggcaaaaaagaatgttgaggatggtgctgaa
actggagggtttgcagaagagaacactggtggtaagttaggtagcgctgcctcatcttct
gccagtcatgtgcagctctatcagaagcttagggctgtagaatatgagataggcgctgtt
gcgtcaacagtggaaccggtgaaaaaacttgaaagaaatgaaaaacattctcacgtgggc
actgactctcatgagcatgggcgtgaagaggatggtgtttcagcttctgcggatgacctt
cagcatgccctagcagttgacagactaacaagcctgaagaaaacccaacagcagttgaag
aaagagctttcccatttgaatgacaagcacgctgagacaatattggagatagtaaaggac
aaatcaaaacctaagagaaagtctaaagaggttaagaaatcaggaaacaacggagaaaag
aggttgaaggtcgtgtcatttgatgaagatgacgattttgatgcagctttggatgcagcc
actgtgggctttgttgaaacagaaagagatgaattggtacggaagggaattttaacacca
tttcacaagctaaagggctttgaacgccgtcttcagaacccagggcaatcaagatttcag
aaccttgggcaatcaagacgtgaagtaaaggaggaagaagaggaaaatgatgactttgct
tctgacagtgttgctagagccatccattcaatgtcagtggctgcacaagctcggccaacc
actaaattacttggtctagaagctttgccaaagcttgatccaccaactcgtcctttctac
aggttaaaaaagtatgcaaaggttcctctatctgcagaagaaaaagctgccaagaaaata
aaaggcaaaaagactagacggcctttgccagacaaaaaatataggagacgaattgctctg
gaggaaagagatgaggaagctactgagaatctgtcagatggtttgcttacatcaagttct
gaaagagaagattctggagatttagaagatgatgttccagaaccttcttccgtaacactt
gatggtgggctgaaaattcctcggagcatatttgatcagctctttgattaccaaaaagtt
ggggtgcagtggttatgggaattacactgccaaagggcaggtggaattattggagatgag
atgggcctagggaagacggtccaggtattggcatttttaggtgcattacatttcagtaac
atgtataaaccaagcatcatgatttgccctgttacactagttagacagtggaaaagggag
gcacggaagtggtgcccaggctttctggtggaaattctacatgattctgctcatgatccc
tcttgtaggaagatgcgagaaaaatctgatgaaagtgatgatagcaaagattccgaggaa
agtgattataggaaaaacttactgtgcaaaggcacaaaaaaatgggattccttgataaac
cgtgttttgaggtcagaatctggtttgctcattacaacttatgaacaactacgactgtta
ggcgagaagttgctcgacattgagtggggttatgcagtcctggacgaaggacatcgtatt
cgaaatccaaatgctgaagtcaccttagtttgcaagcagctacaaactgtgcaccggata
ataatgtctggttctccaattcaaaacaaattgtccgagttgtggtccttgtttgatttt
gttttccctgggaagttgggtgtgttgcctgtatttgaagcagagtttgccgttcctata
tctgttggtggctatgctaatgcttccccgttgcaagtatcaactgcatataggtgcgct
gtcgttcttcgtgacttgattatgccttatcttcttagaaggatgaaagctgatgtcaat
gctcatttgccaaagaagactgaacacgttctcttctgcagccttacgtctgagcaacgt
tctgtctatagagcattccttgcaagctctgaagtggaaagtattttggatgggaataga
aattctctttctggaattgatgtaatgcgtaaaatttgtaaccacccagatctactcgag
agggaacactctttccagaatcctgactatgggaatcctgaacgtagtggaaaaatgaag
gtggtcgagcaagtgctgaaggtctggaaggagcaaggtcatcgtgttcttcttttcacg
cagacccaacagatgcttgacattttagagagatttctggtcggcagtagttatacctac
aggaggatggatggtggtactcccgtcaaacagagaatggcattgattgatgaattcaat
aattccagtgaggtctttatttttattttaacaaccaaagtcggtggtctgggaaccaac
ttgactggagcaaatagggtgataatttttgaccctgattggaatccgtcgactgacatg
caggcaagggagcgtgcttggcgtattggtcaacagcgggatgtaacagtgtatagattg
atcactcgtggaactgtagaggagaaggtgtaccatcgacagatatataagcattttctc
actaataagatattaaagaacccacagcagaaaaggttctttaaggctcgagacatgaag
gatctctttacgctacacgaggatggggaggatggatcaacagaaacatctagtattttc
agtcagttgcctgataatgtaaatgtggttggtgctcagaagaatgagaagcatgagcag
aaatctggcagtggctcggcattgtttgcagactctgctgatgaaaaaccaagcaaatca
gagattgaaactcctggaaggaatggttcttctgtagagatgggacaggccggtggaaca
gacgtagacacaggtatcttgaagagcctttttgatgcgcacggtattcatagtgccgtt
aatcatgatgtcattgctaatgctgatgacggggagaagatgcatctagaggagcaagct
tctcaagttgcacgtagagcagccgaggcattgcggcaatctagaatgctgcgaagtaat
gagagtatctctgttccaacgtggactggaagggctggaactgctggtggaccatcgtct
gtgcgtcggaagtttggttcgactgttaactcactggtaaacagcaattccaaatgctca
gcaattccaagaaacggagctagccatttaaatggctgcatagcagctggagcatcttcc
ggaaaggccttgtcctcagcagagctacttgctaaaatccgaggaaaccaagaaagagca
ctcggcgctgggcttgaacatctaccacaaccagctccttcaagtactccaaacaatgta
agaggtgcaaatgtcggtccttcttttagagtacaacccgaagtattgattcgtcaaatg
tgtacatttgttcaacaaagaggtggaaccacagattcggtcagtattgtacagcatttt
aaggacaggatacccccaaatgatctgcccttgtttaagaatctgctgaaagagatagca
atattagagaaaagccccagtggttcattctgggctcttaagccagaatataaacaataa
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