Cucurbita moschata (crookneck pumpkin): 111452364
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Entry
111452364 CDS
T05248
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111452364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmos03041
]
111452364
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111452364
Spliceosome [BR:
cmos03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111452364
Complex B
111452364
Complex C
U2 SnRNP specific factors
111452364
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
111452364
NCBI-ProteinID:
XP_022948804
UniProt:
A0A6J1GB10
LinkDB
All DBs
Position
Unknown
AA seq
779 aa
AA seq
DB search
MSKRKFGFEGFGINRQTTYNFERSQAPQRLYVPPSSRGHGHDNYEDTDVDNIEYDDNEAE
EASGNGDNVAGAGGGEEEEIDPLDAFMEGIHEEMRAPPPPKPKEKVDKYRDEEEDDPMES
FLKAKKDVGLTLAADALHAGYDSDEEVYAAAKAVDAAMVEYDSDDNMLIVEKKKIESIPA
LEHSSIDYEPFNKDFYEEKASISGMSEEEVSEYRKNLAIRVSGFDVPRPIKTFEDSGFSP
QLMNAIKKQGYEKPTSIQCQAMPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELE
KEEGPIGVICAPTRELAHQIYLECKKFSKVHGLRVSAVYGGMSKFDQIKELKAGCEIVVA
TPGRLIDMIKMKALTMSKATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP
RKVEKLAREILTDPVRVTVGEVGMANEDITQVVHVLPSDLEKLPWLLEKLPEMIDDGDVL
VFASKKATVDEIESQLLQKGFKVAALHGDKDQASRMETLQKFKSGVYHALIATDVAARGL
DIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDRDGKAHTLITQKEARFAGELVNSLIAAG
QNVSMELMDLAMKDGRFRSKRDARKKGGGGGGGGGKKGKGRGGGNGRGVRGVDFGLGIGY
NPESSGSNPSTNNVQSRSAAVNSLRTGMMAQFKSSFVAASSAPPSQGSNSSYSMPANKRP
TLAGFVSGGSIGGGANRPPPPPPRANSYVPNAGEFSSQKNSESSGDRSKERRRPSGWDR
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggaagtttggctttgaagggtttggaatcaatcgacaaactacttacaat
ttcgagcgctcccaagctccccagaggctttatgtccctccctcgtcgcgcggccatggg
cacgacaattatgaagataccgacgttgataatatagaatatgatgataatgaagcggag
gaagcgagtggaaatggcgacaatgtcgctggcgctggcggtggtgaagaagaagaaatt
gaccctttagatgcgttcatggagggaattcacgaagagatgagagcacccccgcccccc
aaaccaaaggagaaggtggataagtatagggacgaggaggaggatgatccaatggagagc
tttcttaaggctaagaaggacgtgggactgacgctggctgctgatgcgcttcatgctggt
tatgattcggacgaggaggtttatgcggcagctaaggctgtggatgcagcgatggttgag
tacgactctgatgataatatgctgattgttgagaagaaaaaaattgaatcaattcctgct
ctagaacatagttccattgattacgagccgttcaataaggatttctacgaggagaaagct
tcaatatcaggaatgagtgaggaggaagtttctgagtaccggaagaatttggctattcgt
gtgtcgggttttgacgttcctaggccaattaaaacatttgaagactctggattttcccct
caacttatgaatgctataaaaaagcaagggtacgagaaacctacttctatacagtgccaa
gctatgccgattgtgctttccgggagagatatcattggaatagcaaaaacgggttccggt
aagactgctgcttttgttcttccaatgattgttcatattatggatcaacctgaacttgaa
aaagaagagggtcctattggagtgatatgtgcccccaccagagaactcgctcaccaaata
tacctcgagtgtaaaaaattttcaaaagtacatgggctacgtgtctctgcagtatatggt
gggatgtctaaatttgatcagataaaagaactcaaagctggatgcgagatagttgttgcc
actcccggcagactgatagatatgataaaaatgaaagccttgacaatgtcaaaagccaca
tacttggtacttgatgaagccgatagaatgtttgaccttggatttgaaccccaaattcgc
tccattgttggtcagattcggccagaccgtcaaaccttactcttttctgcaacaatgcct
cgtaaggttgaaaagttagctcgagaaattctcaccgatcctgtacgagttacggttgga
gaggttgggatggctaatgaagatatcacacaggttgttcatgtacttccttctgatctg
gagaagttgccttggcttcttgagaagttacctgaaatgattgatgatggggatgtattg
gtgtttgcttctaaaaaagccacagtggatgagattgaatctcaactcctacagaaaggt
tttaaggttgcagctcttcatggtgacaaagatcaggcatcacgaatggaaactctgcaa
aagtttaaatctggtgtttatcatgctcttattgcaactgatgttgctgcccgtgggctt
gacattaagtcgatcaagtccgttgttaactttgatattgcaaaggacatggacatgcat
gttcatcgtattggtagaacaggtcgtgctggtgacagggatgggaaagcacacaccctt
ataactcagaaagaggctcgctttgctggtgaattagtcaatagtttgattgctgctggc
cagaatgtttcaatggaactgatggatctggccatgaaggatgggcgattcaggtcgaag
cgtgatgcaaggaaaaaaggaggtggtggcggtggcggtggcgggaagaagggtaaaggg
agaggtggcggcaatggtcgaggcgtgcgtggagtggattttggtctaggaattggttat
aacccagaaagcagtggtagtaatccttcaacaaacaatgttcaaagtcgatctgcagct
gtgaattctctgaggacaggaatgatggcacaatttaagagcagtttcgtcgctgcttca
tcagctcctccaagtcagggttcgaatagcagctatagtatgccagcaaacaaacgacca
acattagctggctttgtatcaggtggctcgatcggtgggggtgcgaaccgccctccacct
cctccgccaagagcaaactcatatgttccaaatgctggagaattctcaagccaaaagaac
tcagaaagttctggcgacaggtccaaggaaaggaggaggccctctggttgggacagatga
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