Cucurbita moschata (crookneck pumpkin): 111455064
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Entry
111455064 CDS
T05248
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03015
mRNA surveillance pathway
cmos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111455064
09123 Folding, sorting and degradation
03018 RNA degradation
111455064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmos03019
]
111455064
03041 Spliceosome [BR:
cmos03041
]
111455064
Messenger RNA biogenesis [BR:
cmos03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111455064
mRNA cycle factors
Stress granule specific factors
111455064
Spliceosome [BR:
cmos03041
]
Complex C
Other components
Complex C specific factors
111455064
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
Nup35_RRM
MARF1_RRM1
DUF134
Motif
Other DBs
NCBI-GeneID:
111455064
NCBI-ProteinID:
XP_022952357
UniProt:
A0A6J1GK74
LinkDB
All DBs
Position
Unknown
AA seq
649 aa
AA seq
DB search
MAQVPPQPQVPNSGADPAANGGGQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVC
RDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSMRKSGSGNIFI
KNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGML
LNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEELRNMFGEFGPITSVVVMR
DGEGKSKCFGFVNFENADDAARSVDALNGHKVDGKEWYVGKAQKKSEREVELKNRFEQSV
KEAADKYQGANLYVKNLDDTIDDDKLKELFSAFGTITSCKVMRDPNGLSRGSGFVAFSTP
EEASRALGEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYP
PGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRS
GGRRAGAIQQTQQPVPMMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMP
PRDAVHPQPVPVGALASALANSTPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQT
EVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAAADQLASLSLTDNLDS
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttccacctcaacctcaagttcccaactccggcgccgacccggctgccaat
ggaggcggacagcatgtgacgacgtcgttgtatgttggagatcttgacgtgaacgtcacc
gattcccagctttatgatctttttaatcaggtgggacaggtggtttctgttagggtttgc
agggatttgacgacccgtcgatcgcttggttatggctatgtcaattacagcaacccagtg
gatgcttcaagggcattggatgtgctaaacttcacccctttgaatgggaatcctattaga
gtcatgtattcgcatcgtgaccctagcatgcggaagagtgggtctggaaatatttttatc
aagaatttggacaaggcaattgatcacaaagcgttgcacgatacattctctgcatttgga
aacattctctcctgcaaggttgctacagattcgtctgggcagtctaaaggctttggtttc
gtacaatttgatactgaggaagctgccttaaaagctatagagaagttgaatggtatgctg
ctcaacgacaagcaggtgttcgtgggaccgttccttcgcaagcaagaaagagaaagtgtc
agtgagaaaacaaaatttaacaatgtttttgttaagaatttagcagaaactacatctgaa
gaagaattgaggaatatgtttggggagtttggaccaattaccagcgttgtggtcatgagg
gatggggaaggaaaatcaaaatgctttggctttgtgaactttgaaaatgcggatgatgct
gctagatctgttgatgctctcaatggacacaaggttgatgggaaagagtggtacgttgga
aaagcccagaagaaatctgaaagggaagttgaactgaagaatcgatttgagcagagtgta
aaagaagctgctgacaagtatcaaggtgcaaacttatatgttaagaatctagatgatacc
attgacgatgataaactgaaggagttattctctgcgtttggaaccattacctcatgcaag
gttatgcgtgatcccaatggactgagtagagggtctggctttgttgcgttctcaactcct
gaagaggcttctagagctcttggagagatgaatggaagaatgattgtgagcaaacctctt
tatgttgcacttgcacagaggaaggaagatagaagagctaggttgcaggcccagttttcc
caaatgcagccaatggcaatggcatcttcagttgctcctcgtggcatgccgatgtatcct
ccaggtggtccaggtatcggacaacaaatattttatggacaagctccacctactattatt
tcatcacagcctggatttggttatcagcagcaactcatgcctggaatgaggcctggtgga
ggtccgatgccaaatttctttgtgccaatggttcagcagggccagcaaggtcaaagatct
ggtggaaggcgagctggtgctattcagcaaacccagcagcctgttccaatgatgcagcag
cagatgctaccaagaggacgtgtctaccgttatcctcctgggcgtggactgcctgatctt
cccatgccgggtgttgctggaggtatgttctctgttccatatgagatgggtggaatgcca
ccgcgggatgctgtccaccctcaaccagttcctgttggcgctttggcttctgcccttgca
aattcaactccagaccagcagagaacgatgcttggggagaacctttatccacttgtggaa
cagctagagcctgataatgcggccaaggtaacaggcatgctattggaaatggaccaaact
gaggttctgcacttgctcgagtcaccggaagctctgaaggcgaaggttgccgaggccatg
gaggttttaagaagtgttgctcagcagacgggcaatgcagctgctgatcagttggcttca
ttatccctgactgacaaccttgattcctaa
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