Cucurbita moschata (crookneck pumpkin): 111464981
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Entry
111464981 CDS
T05248
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cmos
Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmos00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111464981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmos03041
]
111464981
03009 Ribosome biogenesis [BR:
cmos03009
]
111464981
Enzymes [BR:
cmos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111464981
Spliceosome [BR:
cmos03041
]
Complex A
U1 snRNP components
U1 related factors
111464981
Complex B
111464981
Ribosome biogenesis [BR:
cmos03009
]
Eukaryotic type
Pre-60S particles
Helicases
111464981
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
111464981
NCBI-ProteinID:
XP_022965035
UniProt:
A0A6J1HMK2
LinkDB
All DBs
Position
Unknown
AA seq
613 aa
AA seq
DB search
MNPYDHRYADPNSYRERRSDLVGPQPAAPPPIAGRESMYKGFHPPPVPYYGRERGGGGAL
PNAGGFNGFPRFQPPAGPFNIGRSGNDFGSGGRRMFDSGRGGNMGFGGRRGGGTGFEGRV
GGSGAGRGGSSRGDLDNIVLPSQNFGDLVPFEKNFYTECPSVRAMTESEVKMYRERRDIR
VEGYDVPKPIRSFQEANFPAYCLDVIAKLGFVEPTPIQAQGWPMAMKGRDLIGIAETGSG
KTLAYLLPALIHISAQPRLVHGQGPIVLVLAPTRELAVQIQQEVTKFGLRANIRSTCIYG
GAPKGPQIRDLKNGVEIVIATPGRLIDMLEAGHTNLQRVTYLVLDEADRMLDMGFEPQIR
TIVSQIRPDRQTLYWSATWPREVEKLARQFLHNAYKVIIGSSDLKANQSINQVVEVLPEA
EKYRRLIKLLVEVMDGSRILIFVETKKGCDKVTRQLRMDGWPALSIHGDKKQAERDLVLS
EFKSGRNPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFF
THENAKHARELIKILREAGQIVSPALSALASSSGTGGSSSKYRPQGHRGFGGNRTMVSGP
NAIPIGLTRPRPR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaatccttacgaccatagatacgccgatcccaattcctaccgcgagcgccgaagtgac
ctagtgggtccacagcctgctgcgccgccgccgatagcagggcgtgaatctatgtacaaa
ggctttcatcctcctccagtaccatattatggccgtgaaagaggtgggggaggtgcttta
cctaatgctggaggttttaatggcttcccgcggtttcagcctcccgcaggaccgttcaat
atcggtcgcagtggcaatgatttcggtagcggcggaaggagaatgtttgattctgggagg
ggcgggaatatgggttttggaggtagacgtggtggaggaacgggatttgaggggcgtgtt
ggcggaagtggggctggacgtggtggttcatcaagaggggacttagataacatagttctt
ccgagtcagaattttggggatttggtcccttttgaaaagaacttctacactgagtgtcct
tctgtgcgagcaatgacggagtccgaagtcaagatgtacagagagaggcgtgatattaga
gtggaaggatacgatgtcccaaaaccgattcggagttttcaggaggcaaattttcctgct
tactgccttgatgtgattgcgaaattgggatttgttgaaccaacaccaattcaggctcaa
ggatggcccatggccatgaaaggaagagatttgattggcattgctgaaactggctctggg
aagactctggcttatctactgccagctttaatacacattagtgcccagcctcgtttggtg
catggtcaaggtcccattgtattggtgttagcgcccaccagagaattagctgttcagatt
caacaagaggtcactaaatttgggttgcgcgctaatattagaagtacttgcatttatggt
ggggctcctaagggccctcaaattcgtgatctcaaaaatggtgttgagattgttattgct
acacctggtcggctcatagatatgctggaagctggccacacaaacctgcagcgagttact
tatcttgttttggatgaagctgatagaatgctggacatgggatttgagcctcaaataagg
acaatcgtgagccaaatccgacctgataggcagacattatattggagtgccacatggcca
agggaggtcgaaaaattggctaggcaatttttacataatgcatataaggtgattatcggt
tcatcagatcttaaagctaaccagtcaataaaccaagtcgtcgaagttttaccagaggct
gagaaatatagaaggttaataaaattgcttgtagaagtgatggatggtagccgtattctg
atttttgtggagacaaaaaagggatgtgataaagtaacaaggcaattgagaatggatgga
tggccagctctatccattcatggggataaaaagcaggctgaaagggacttggttttgtcc
gagtttaagagtggaagaaacccaataatgacagccactgatgtggctgcaagagggctt
gatgtgaaagatataaaatgtgtgatcaactatgatttcccatcaagcctcgaggattat
gtccacagaataggccgaacggggcgtgctggtgcaaagggaactgcattcacattcttt
actcatgagaatgcgaaacacgccagagagcttataaagatactgcgagaagcagggcag
atcgtctcccctgcattgtctgctttagcctcgtctagtggcactggaggttctagctct
aaataccgccctcaaggtcacagaggctttggtggtaaccgaacaatggtttcaggacca
aatgcgatccctattggtttgacgagaccaaggcctcgctag
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