Cyclobacterium marinum: Cycma_1183
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Entry
Cycma_1183 CDS
T01592
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cmr
Cyclobacterium marinum
Pathway
cmr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Cycma_1183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmr03400
]
Cycma_1183
Enzymes [BR:
cmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Cycma_1183
DNA repair and recombination proteins [BR:
cmr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Cycma_1183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DUF6259
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AEL24955
UniProt:
G0IY51
LinkDB
All DBs
Position
1393330..1395756
Genome browser
AA seq
808 aa
AA seq
DB search
MGLKAYREKRSFNDTSEPKGVVENTHQFRFVVQRHRARKLHYDLRLEIDGVLKSWAVPKG
PSMNPRDKRLAVQTEDHPVAYLSFEGLIPKGNYGAGKMTIWDEGNFQSLQQPNDLCKDHK
KGKLKIIFHGSKLKGIFTLVRSSSMNKKDQWLLIKHDDAFATDLDYDAEDFNEEAFSSGP
GENSKKLDLKSLIKPMLASPGTKIFNDKDWIYELKYDGYRAIANIRNDKVELYSRNGISL
NEKFQPIYKELKKIEHTAILDGEIVVLDKNGLPQFNSLQNYDKQSTKGRLVYYVFDLLHL
NDHDTLGLPLIDRKQLLKDLIPENTHIRYCDHVETMGITVYDRAIDMGMEGVIAKKANST
YDLNSRSANWLKFKKIENTETIICGYTLSNKKSRKFGSLILGMVEEGQLTYVGTCGTGFS
EEQLTEMYFKFEVLKTKNPVFNIRKHLKGREAVWLIPKLICEVKFSEWTSSKVMRHPVFL
RLREDKNLNFEPNQIPLKKTASKKTGEDAFSLKVDDIMVSITHPEKSYWPESGYTKYDLL
DYYIQMSDLILPYLKDRPESLHRHPSGIHGESFYQKDHEHLPEWIDTHGIHSSSSDKEIN
YLLCQQKATLLYLNNLGCIELHPWHSTIYQLDYPDYAILDLDPSEENTFEEVMETALATK
EILKQANIKGYCKTSGSSGLHIYLPMGGKYTYEEARNFTKLLCYFIQEKLPKLTTLERSL
KKRGPKIYLDYLQNRKGQTIVAPYSLRPRLHAPVSMPLLWSELKPGLKITDFTIKTVPKL
MEDRKDSFKPVLGKAIDMSSAIAHLNNL
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgggactcaaagcataccgtgaaaagcgaagctttaatgacacatctgaacctaaaggt
gtggttgaaaacacccatcaattcaggtttgttgtgcaaaggcaccgtgcccgaaagttg
cattatgacctgagactggaaatcgatggagtcctcaagagctgggcagtacctaaaggg
ccttccatgaatccccgagacaaacgactggctgtacaaacggaagatcatccggttgca
tatttgagttttgaaggtcttattccaaagggcaactatggtgcgggaaaaatgaccata
tgggatgaaggaaatttccaaagcctacagcaaccaaacgatctctgtaaagaccataaa
aaaggaaaactgaaaatcatttttcacggcagtaaactaaaagggatttttactttggtt
cggtcttcctcaatgaataaaaaagaccaatggttgctcattaaacatgacgatgccttt
gctaccgacctggattacgacgcagaagattttaatgaggaagccttttcttcggggcca
ggtgagaattcgaaaaagctggatttaaaatcgctaataaaacccatgttagcctcgcca
ggcactaaaatttttaatgacaaagactggatatacgaattaaaatatgatggttatcgt
gcaatagctaatatccggaatgacaaggtggagctctattcccgcaatggaatttctctc
aatgaaaaatttcaacctatttataaggagcttaaaaaaattgagcataccgcaatccta
gacggcgaaatagtggtgctggacaaaaatggtcttcctcaatttaattcccttcaaaat
tatgacaaacaatcaaccaaaggaagattggtttattatgtattcgatctactccattta
aacgatcacgataccttgggacttcccctcatcgaccgtaagcaattgttaaaagatttg
attccggaaaacactcatatacgctattgcgatcatgtcgaaaccatgggaattacggtt
tacgaccgagccattgatatgggtatggaaggtgtaatcgccaaaaaagccaattctaca
tatgacctaaactcccgctctgccaactggttaaagtttaaaaagattgaaaacacagaa
acgattatatgtggctacacgctttcgaataaaaaatcacgaaagtttggctcattaatt
ctaggaatggttgaagagggtcaactgacttatgttggaacttgtggtacgggtttttca
gaagagcagctgacagaaatgtattttaaatttgaagtccttaaaactaaaaatccggta
ttcaatatacgcaagcacctgaaaggacgtgaagcagtgtggttgatccctaaactgatt
tgtgaagtaaaattttcggagtggacttcttctaaagtaatgcgacatcctgttttttta
aggttaagggaggataaaaatttgaattttgaaccaaatcaaattcccttaaaaaaaaca
gcttctaaaaagacaggcgaggatgccttttcattgaaagtggatgatatcatggtatct
atcactcatccggaaaagagctattggccggaatcgggttataccaaatacgacttgttg
gattattacattcaaatgtccgacttgattttaccttacctgaaggatcgtccggaaagt
ttacacaggcatcccagtggcattcacggtgaatctttttatcaaaaagaccatgaacat
ttacctgaatggattgatactcacggcattcattcatcatcttcagataaagaaatcaat
tatttattatgtcagcaaaaagccactttattatatttaaataatttgggatgcattgag
ttacatccctggcattctactatctatcaattagactatcctgactatgctatccttgac
ttggatccttccgaagaaaatacctttgaagaggtcatggaaactgctttggcaactaaa
gaaatacttaaacaagcaaatatcaaaggatattgtaaaacatcaggttcatccggtttg
cacatttatcttccaatgggaggaaaatacacctatgaggaagcaagaaacttcaccaag
ctactctgctatttcatacaagaaaaacttcctaagctaactactctggaacgctcactt
aaaaagaggggacccaaaatttacctggattatttacaaaaccgcaaaggacaaaccatc
gttgctccttacagtttgaggcccaggttgcatgccccggtatccatgccactgctgtgg
tccgaactcaaacccggattaaagatcaccgatttcaccatcaaaaccgttccaaagtta
atggaagatagaaaagacagttttaaaccagttctaggtaaagctatcgatatgagcagt
gccatagcacacctcaacaatttataa
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