Chelonia mydas (green sea turtle): 102944910
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Entry
102944910 CDS
T02989
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X2
KO
K06823
collagen type XVIII alpha
Organism
cmy
Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmy04147
]
102944910 (COL18A1)
00535 Proteoglycans [BR:
cmy00535
]
102944910 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
cmy00536
]
102944910 (COL18A1)
Exosome [BR:
cmy04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102944910 (COL18A1)
Proteoglycans [BR:
cmy00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
102944910 (COL18A1)
Glycosaminoglycan binding proteins [BR:
cmy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102944910 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
102944910
NCBI-ProteinID:
XP_037768287
LinkDB
All DBs
Position
11:complement(74787393..75026981)
Genome browser
AA seq
1567 aa
AA seq
DB search
MAPAEQRLCLLLLLTCCCSLVETQFFDWLWGSRKAPTVTTLPPTESPATEGQTAEPLTSP
VATTTRAAVPATAQPGDQVWSTLAVTRPAPATDTAVPAPASPSLSQDQGENIAGVGAEIL
DVAEGIRSLVQLWDEGTTRRTENAGEPTAAAPRTTTRTSLAAPSSATGLAGHGNMTANST
GDGHGLLGTGQAEASLPMPTGPPPAWNRTRALLQKPAAAPPEHFSTEVSLLQLIGDPPPE
QITKVNGPDNTLAYVFGPDANTGQVARYHLPSPFYRDFSLLFHVQPTTDKAGVLFAITDA
SQTVIYVGVKLSTVQDRKQQIIFYYTEPGSESSYAAATFSVPSLVNEWTRFAISVEDDEV
VLYLNCEEFRRVRFERSPDEMELEDGSGLFVGQAGGADPDKYQGVIADLKVTGDRQAADL
QCEEQDEDSDVASGDFGSGVEERPHLSGRERGTPAVSRLPEPPPVTSPPTAGETVEKVSV
GSQLQTKQIQVEGPQQVSTAARVGPKGEKGAPGERGERGPKGDSGTGGVLAAGSTKGDKG
EKGDLGVKGSAGFGYPGLKGQKGEPGAQGSPGPAGPPGPPGSTVQRLDGSVVEQVAGPPG
PTGPPGLPGEDGLPGKDGEPGDPGEDGKPGDVGPQGFPGTPGEPGLKGQKGEPGVGARGP
PGLPGPPGTPGLSSKQDKLTFIDMEGSGFGGDLESFRGPRGPPGPPGPPGVPGLPGEPGR
FGMNSTELQGPPGLPGRAGVPGAKGLPGPAGPPGENGSAGQPGLRGERGDPGDLGLPGAP
GPKGSKGEMGLAGAPGETGLAGLPGPMGPRGPPGPPGPAGPPGPGYEVGFGDMEGSGMPF
FSTFPGERGPEGLQGPPGIPGLKGDTGSPGLPGLPGQKGDHGAPGVDGRPGLEGFPGPQG
PKGDKGIQGAKGERGQDGVGSPGPPGLPGPPGQVIYASGEEKALAGLPGPEGRQGQAGFP
GPVGPKGDSGEPGFPGTPGPKGEKGEPGAIISPDGTGISAGTKGDKGEQGLVGPMGPAGR
HGQPGQKGEIGFPGRPGRPSMNGLKGEKGDPGGLGLQGPPGLPGPPGAPGSVVSVYDNNA
FSESGLPGPPGLPGYQGAPGQKGERGDTGAPGPPGQFPYDLNEFGSTFRGEKGDRGDPGL
KGEKGESGGGGLYGPSVTGPPGPQGYPGLPGPKGDSIRGLPGPPGPQGPPGIGYEGRQGP
PGPPGPPGPPSFPGPHRQTVSIPGPPGPPGPPGPPGTSGSLTSSGQLRILPSYQSMLSTA
QEVPEGWLVFAQDREELYVRVRSGFRRVRLEEHTSISSPGLDNEVYDKPPSVHYSHGDTA
SSGFLHPRREHNPSATARPWRADDSIANHHRLPDHSPHSAQPQQELLDSFPPRRRGESAP
SAGHTHHDFQPALHLVALNAPLSGSMRGIRGADFQCFQQARAVGLTGTFRAFLSSRLQDL
YSIVRRADRSGVPIVNLRDEVLFNNWEALFSGTEAQFRAGARILSFDGRDVLRDSAWPQK
NVWHGSDAKGHRLTESYCETWRTDNSVVTGQASSLASGKLLEQKVSSCQNAFIVLCIENS
FMTSSKK
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atggctccagctgagcagcgtctgtgtctcctgctcttgctaacctgctgctgctccttg
gtggagacacaattttttgactggctctgggggagccgaaaagcccccacggtaacgacc
ctgccccccacagagagccccgctacggagggacagacggcggaaccgcttacctctcct
gtggccaccacgacacgggcggctgtgccggcgaccgcgcagccaggggaccaggtatgg
agcacgctcgcggtcacgcggccggcaccagccacggacaccgctgtccccgctccggca
tcaccttccctgtcccaggaccagggggagaacattgcgggggtgggggctgagatcctg
gacgtagcagagggcatcaggagcctggtccagctatgggatgaggggaccacccggagg
actgaaaacgcaggggagcccacagccgctgcgcctcggacaaccactcgcaccagcctg
gctgctcccagctctgcaactgggctggctggccatgggaacatgactgccaactcgaca
ggggatggccacggcctgctggggactgggcaggcagaggcttcgcttcccatgccaaca
ggccctccgcctgcctggaacaggacacgggcgctcttacagaagcctgcggcagctcct
ccagaacatttcagcacagaagtgagtcttttgcagctgattggagatcccccaccggag
caaataaccaaagtcaatggccccgacaacactctggcctatgtcttcgggccggatgcc
aacaccggtcaagtggcccggtaccacctgcctagccccttttatagagacttctcgctc
cttttccacgttcagcccaccaccgacaaggctggcgtgctctttgccatcacagatgcc
tcgcagacggtcatctacgtcggagtgaagctctccaccgtgcaggacaggaagcaacag
atcatcttctactacacggagccgggctccgagagctcgtatgcagctgcaactttctct
gtgccttccctggtgaacgagtggactcgctttgccatcagcgtggaggatgacgaggtg
gttctgtacctgaactgtgaggagtttcgccgggttcgctttgagcgctctcccgatgag
atggaactggaggatgggtctgggctctttgtgggtcaggctggaggggctgatccagat
aaataccagggggtgattgcagatctgaaagtgacaggtgatcgccaagcagctgatctc
cagtgtgaggaacaggacgaggattcggatgtggcgtctggagattttggaagtggagtt
gaagaaaggccccacctatcaggaagggagcgggggaccccagctgtgtcgcggctcccg
gaacctcccccggtcacgtctccccccaccgctggggagacagtggagaaagtgagcgtg
ggctctcagctgcaaaccaagcaaatccaagtggaaggaccccagcaagtttctacagca
gccagggttggtccaaaaggtgaaaagggggccccgggagagagaggtgaacgtggcccg
aaaggggactctggaaccggcggggttctagcagccggcagcacgaaaggcgacaagggg
gaaaaaggagacctgggcgttaagggaagtgcaggatttgggtatcccggcttgaagggg
cagaaaggggagccaggtgcccagggatctcccggccccgctggcccgcctgggccccct
ggctctacggtgcagcgcctggacggctctgtggtggagcaggtcgccgggcctccagga
ccaacaggccccccagggctgcccggggaagacggcctccctggcaaggatggcgagccc
ggtgatcctggtgaagacgggaaacctggtgatgttgggccccagggattccctggaact
cccggagagcctggcctcaaggggcagaagggtgagcccggagtcggcgcaagaggcccc
cctggactgcccggaccgccggggacaccgggcctctcttccaaacaggacaagctgacg
ttcatcgacatggaaggctctgggtttggaggcgatctggaaagcttcaggggcccccga
ggcccaccagggccccccggacctcctggggtgcccggcctgccaggagagccaggaaga
tttgggatgaacagcactgagctgcagggaccccccggcctgccaggcagagctggcgtc
cccggagccaaaggcctaccaggtcctgcaggtcctccaggagaaaatgggtctgccggg
cagcctgggcttcgaggagaacggggggacccaggtgacctaggcctccccggagctcct
ggacccaagggcagtaagggcgagatggggctggcgggagccccaggggaaaccgggctg
gcaggccttcctggacctatgggaccacgaggaccaccaggtcccccaggccctgctgga
cctcctgggccaggctacgaggttggatttggcgacatggaaggctcggggatgcctttc
ttttctacctttcctggagaacgcggacctgaagggctgcaggggccaccaggaatcccc
ggactcaagggggacaccggcagccctgggctgcctggcttgccaggacaaaagggggac
cacggggctccaggcgtggatgggcgcccagggctggaaggtttcccaggacctcaggga
cccaaaggtgacaagggcatccagggggctaagggtgaacgaggccaagatggagtgggc
tccccagggccccctgggctccctggacccccggggcaggtcatctatgcgtcgggtgaa
gagaaagcgttagctggtttaccaggccctgagggcagacaaggccaagctggcttcccg
ggcccagtgggacctaaaggagactcaggagagccaggtttcccaggcactccaggacca
aagggtgagaaaggagagcctggagcgatcatcagcccagatgggacgggcatctcggcc
ggcacgaaaggagacaagggtgagcaggggctcgtgggacccatgggcccagcgggccgg
catggacaacctggacagaagggggaaatcggctttcctggcagaccgggtcgtcccagc
atgaacgggctgaagggcgagaagggggaccccggagggctcggcttgcagggtcctccg
ggtctccccgggcccccaggtgcccctggcagtgtagtgtccgtctacgacaataacgca
tttagtgagtcgggccttcccggccctccaggattgcctggctaccagggtgccccagga
caaaagggtgaacgaggcgacacaggtgccccagggcccccaggccagttcccctatgat
ctcaacgaatttggttccaccttccggggtgaaaaaggagaccggggggaccctggactg
aaaggagaaaagggggagtctggcgggggaggactgtacggaccaagcgtcactggacct
ccaggtcctcagggctatcctggccttccgggtcccaagggggacagcattagaggcctg
cctggccctccagggcctcagggaccccctggcattgggtacgaggggcggcagggcccc
cctggtccccctgggcctcccgggcccccctcctttccaggaccccacagacaaactgtc
agcatccctggcccacctgggccgccagggccaccgggacctccagggaccagcgggtcg
ttgacctcctccgggcagctgcggatcttgccatcgtatcagtccatgctgagcacggcc
caggaggtgcccgagggctggctggtcttcgcacaggacagagaagagctgtacgtccgg
gtgcggagcggcttccggagagtccggctggaggaacacacttccatctccagcccgggg
ctggacaacgaagtgtacgacaagccgccgagtgtccactactcgcatggcgacaccgcc
tcctccggcttcctgcacccgcgccgagagcacaacccctccgccacagcccggccctgg
cgagcggacgacagcatcgccaaccaccaccgccttcccgaccactcgccccacagcgcc
cagccccagcaagagctgctggacagcttccccccacgccgccggggcgagagcgccccc
tctgctggtcacacgcaccacgacttccagcccgccctccacctggtggcgctgaacgcc
ccactgagcggcagcatgcgcggcatccggggagccgacttccagtgcttccagcaggcc
cgggcagtcgggctgacgggcacgttccgagccttcctgtcctcccggctgcaagacctg
tacagcatcgtgcgcagggccgaccggagcggggtgcccatcgtcaacctccgggatgaa
gtgctgtttaacaactgggaggcgctgttctcgggcacggaggctcagttccgagctggc
gctcgcatcctctcgttcgacggaagagatgtcctgagagactctgcgtggcctcagaag
aacgtgtggcacggctctgacgccaagggccaccggctcacagagagctactgcgagaca
tggaggacggacaacagcgtggtgacgggccaggcctcctcgctggcctcgggcaagctc
ctggagcagaaggtgagcagctgccagaacgccttcatcgtcctgtgtatcgagaacagc
ttcatgacctcttccaaaaagtga
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integrated database retrieval system
