Croceicoccus naphthovorans: AB433_09865
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Entry
AB433_09865 CDS
T03964
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cna
Croceicoccus naphthovorans
Pathway
cna03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AB433_09865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cna03400
]
AB433_09865
Enzymes [BR:
cna01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AB433_09865
DNA repair and recombination proteins [BR:
cna03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AB433_09865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AKM10204
UniProt:
A0A0G3XHX8
LinkDB
All DBs
Position
1963389..1965920
Genome browser
AA seq
843 aa
AA seq
DB search
MTKTRSAPDPLAEYNARRNFAKTAEPAGKRGRAREGAEGGRFIVQKHDATRLHWDLRLEA
DGVLKSWAVTKGPSPDPDIKRLAVRTEDHPMSYAEFEGVIAKGEYGGGTVMLWDKGTWAP
IAGKSWRDIDDGHLHFTLNGERMKGEWLLIRLKPRKGEKRENWLLRKIRDDHAEDGDPLI
QHELTSVLTGRSMAEIAADKQGRYSLAGKKDADFAAQMAKAADRNEAKAKPRKRRAAGQP
KFRKPQLATLVDAVPAGNGWMHEIKFDGYRAMIAAAGNKVTVWTRSGKDWTDKFGPLVDA
LAALDLPPCLIDGEIVAYDRGGNPDFSTLQAVLKRGHGSQGVGDKLGLHCFDLLEIDGED
ITARPNIERKERLEALLAHAEPPILVADHVIGAGEKLYDTMCKAGQEGIIAKRIDAPYRS
SRTKNWVKVKCTRRQEFVLIGWKKSSAKGRPFASLLLAQSEGDALVYKGNVGTGFSADAM
DDLAAKMARIERKTPPAEVDKASARGVTWLTPKLVAEIAFAEFTADGNLRHASFLGLRSD
KDANAVKPEQASAAPKEDAVEISSRDRIIFPDIGQTKGQLADYYTAIAPLMLPFAAQRPV
SLVRCPQGRAKKCFFQKHDSGSFGPHVHHVPIREKDGGTEDYLYIEDTAGLLACVQMGTI
EFHGWAARSDDVEAPDRMIFDLDPDEGLNFDAVKKAARDIRDRLADLGLVSFAMLSGGKG
VHVIVPLEPDHSWDAHKDFARRFAEALSMAEPDRFTATMSKAKRKGKIFIDWLRNQRGST
AVAPYSARARPGAPVAVPVAWNELRDTDNAHPFSIDDADKLLKRARSKALHGWGMAAQRL
PDV
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaaaaccaggtctgcccctgacccgctggccgaatacaacgcccggcgcaatttt
gcgaaaacggccgaaccggcaggcaagcgcggcagggcgcgggaaggtgcagagggcgga
cgctttatcgtgcagaagcacgacgccacacggcttcactgggacttgcggctggaggcg
gacggcgtcctgaaaagctgggccgtcaccaagggcccctcgcccgatcccgatatcaaa
cggttggctgtgcgaaccgaggatcacccgatgtcctacgccgagttcgaaggcgtgatc
gccaagggcgaatacggtggcggcacggtgatgctgtgggacaagggcacctgggctccg
atcgctggcaagtcgtggcgcgacatcgacgatggccacctgcacttcacgctgaatggc
gagcgaatgaaaggcgaatggctgctaatccgcttgaaaccgcgcaagggcgagaaacgc
gagaactggctgctgcgcaagatacgggacgatcatgccgaagacggcgatcccctgatc
cagcacgaattgaccagcgtgctgacggggcgatcaatggcggagatcgcggccgacaag
cagggcaggtactcgctggcgggaaagaaagacgcggacttcgcggcgcagatggccaaa
gccgccgaccgcaacgaagccaaggcgaagccccgcaagcgcagggcggctggccagccg
aaattccgcaagccgcagcttgccacgctggtcgatgcggtgcccgccgggaacggctgg
atgcacgagatcaagttcgacgggtatcgcgcgatgattgcggcggcaggtaacaaggtt
accgtctggactcgcagcggcaaggactggaccgacaagttcgggccgctggtagacgca
ctggccgcgctggacctgccgccctgcctcatcgatggcgagatcgtcgcttacgacagg
ggcggcaaccccgacttttccactctgcaggccgtgctaaagcgcggacacggatcgcaa
ggcgttggcgataagctaggcctgcattgtttcgacctgctggagattgacggcgaggac
ataactgcgcgccccaatatcgaacgcaaggaaaggctggaggccctgctggcccacgct
gagccaccgatcctcgtggccgatcacgtcatcggtgctggcgaaaagctttacgacacg
atgtgtaaagccggtcaggaaggcatcatcgcaaagcggatcgacgcgccctatcggtca
tcgcggacgaagaactgggtgaaagtgaaatgcacccggcggcaggaattcgtcctgatc
ggctggaagaaatccagcgccaagggccgtcctttcgcctcgctgctgctggcacagagc
gagggcgatgcgctggtttacaagggcaatgtcggcacggggtttagcgccgacgcgatg
gacgatctcgccgcgaaaatggcgcggatcgagcgcaagacaccgcccgccgaagtcgac
aaggccagcgcgcgcggggtcacgtggctgacgccgaaactggtcgcggaaatcgcattc
gccgagttcactgccgacgggaatttgcgccacgccagcttcctcggcctgcgtagcgac
aaggatgcgaatgcagtgaaacccgagcaggctagcgcggcgcccaaagaagacgccgtc
gaaatctccagccgtgaccgtattatcttccccgacattggccagacaaaggggcaactg
gccgactactacacggccatcgcacccctgatgctgcccttcgccgcgcaacgtccggtc
agccttgtccgctgtccgcaagggcgcgcgaagaaatgcttcttccagaaacacgacagc
ggatcgttcggcccgcacgttcaccacgtgccgatccgagaaaaggacggcggaacggaa
gactacctctacatcgaggacaccgccggactgctcgcctgtgtgcagatgggcacgatc
gagtttcacggctgggccgcgcgcagcgacgatgtcgaagcgcccgatcgcatgatcttc
gatctcgaccctgacgaggggctcaacttcgacgcagtgaaaaaagccgcccgcgacatc
cgcgaccgattggccgatctgggccttgtcagttttgccatgctctcgggcggcaaaggc
gtgcacgtcattgtcccgttggaacccgaccattcgtgggacgcgcacaaggacttcgcc
cgccgttttgccgaggcgctgtccatggccgaaccggaccgctttacggcaacgatgagc
aaggccaagcgcaagggcaaaatcttcatcgactggctccgcaaccagcgcggcagtacc
gccgtggcgccctactccgcccgcgctcgacccggcgcgcccgtcgcggtaccggtcgcg
tggaatgaattacgcgatacggacaatgcccacccgttcagcatcgatgatgcagacaaa
ctgctgaaacgcgcgcgatcgaaggcgctgcacggctggggcatggcggcgcagcgcctg
cccgacgtttag
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