Cupriavidus necator N-1: CNE_2c23180
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Entry
CNE_2c23180 CDS
T01564
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cnc
Cupriavidus necator N-1
Pathway
cnc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cnc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CNE_2c23180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnc03400
]
CNE_2c23180
Enzymes [BR:
cnc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CNE_2c23180
DNA repair and recombination proteins [BR:
cnc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CNE_2c23180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEI81266
UniProt:
F8GTV0
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All DBs
Position
2:2503491..2506232
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AA seq
913 aa
AA seq
DB search
MAKTTRPTAPQDPGKRRALAKAAGKHTGKRASTARPAARGAPAAKAAPAALDKYRRMRDF
GATPEPAGGAARTRGKPRKRAGELSFVIQKHAARRLHYDFRLELGGTLKSWAVPKGPSLD
PADKRMAIHVEDHPLDYAGFEGVIPAGHYGAGTVIVWDRGTWLPVGDAEAGYRAGKLKFE
LRGEKLHGHWTLVRMHGSRQKEQDAWLLIKERDETAVPASEFDVVEALPDSVLGGTQRKP
AAKRAKTAQPPDEAAPDARSTAKSLKPPRGAPRAALPLALAPQLATLVEQPPSDAQAWHY
EIKFDGYRLLARIAGKDVRLFTRQGHDWTSKLRALARDVGTLGPPDGWLDGEIVVLDKHG
ATDFQALQNAFDTARVEAIQYFVFDLPYFAGHDLRKVPLVERRALLRRIFAHNTSPRLQF
SEDFEASPADMLEAACRMKLEGVIGKRADASYVSARTNTWIKLKCTLRQEFVVAGFTDPK
GSRAGIGSLLLGVHDSGGRLRYAGNVGTGFDTRTLAALRTQLDALRTDSAPFESVPAGVK
GHWVRPKLVAEVSFGSWTREGRVRHAVFHGLRTDKPARAVSVERPATPAAKGKPAPKAAK
HTGTQPKAGTAAKRATAAGGKVAISHAGRVIDTASGLTKGDLVRYYERAAPLMLPHLRGR
PIAMVRAPSGVGGEQFFQRHGDTLRVDGLNVLDSGLWPGHPALLEIASAEALVSAAQLNV
VEFHTWNASKRSLDRPNRIVFDLDPGEGVPWAQMQEAATLMKALLDELGLASFLKTSGGK
GLHVVVPITPRAGWDEVKAFAHDVVRHVAKTIPQRFVAKSGPRNRVGKIFIDYLRNGVGA
TTAAAFSARARPGLGVSMPVWWEELDTLQGAAQWTVANAGPRLDALAADDPWADYADTRQ
AITRAAARLARTG
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaccacgcgaccgacagcgccacaggatccaggcaaacgccgcgccttagca
aaagccgccggcaagcacacgggcaagcgcgccagcacggcgcgcccggcggcacgcggc
gcgccagccgccaaggccgcccccgctgcgctcgataaataccgccgcatgcgcgacttc
ggcgccacgccggagcccgccggcggcgccgcgcgcacccgcggcaagccgcgcaagcgc
gccggcgagctgtccttcgtgatccagaagcacgcggcgcgtcggctgcactatgacttt
cgccttgagcttggcggcacgctgaaaagctgggccgtgcccaagggcccgagcctggac
cctgccgacaagcgcatggccatccatgtcgaggaccacccgctggactacgccggcttc
gagggcgtgatcccggccggccactacggtgccggcacggtcatcgtctgggaccgcggc
acctggttgccggtgggcgatgccgaggccggctaccgcgccggcaagctgaagttcgag
ctgcgcggtgaaaagctgcacggccactggaccctggtgcgcatgcacggcagccggcag
aaggagcaggacgcctggctgctgatcaaggagcgcgacgagaccgccgtgccggcatcg
gagttcgacgtggtcgaggccttgccggacagcgtgctgggcggcacgcagcgcaagcct
gcggcaaagcgcgcaaagaccgcccagccgcctgacgaagccgcaccagatgcgcgcagc
acggcgaagtccctgaagccgccgcgcggcgcgccgcgcgcggccttgccgctggcgctg
gcgccgcagctggccacgctggtggaacagcctccgtcggacgcgcaggcctggcattac
gagatcaagttcgacggctaccggctactggcccgcatcgccggcaaggatgtgcgcctg
ttcacgcgccagggccacgactggaccagcaagctgcgtgcgctggcgcgcgacgtcggc
accctgggcccgcccgacggctggctcgatggcgagatcgtggtgctcgacaagcatggc
gcgaccgacttccaggcgctgcagaacgccttcgataccgcgcgcgtcgaggccatccag
tacttcgtgttcgacctgccctactttgccggccatgacctgcgcaaggtgccgctggtg
gagcgccgcgccctgctgcgccggatcttcgcgcacaacacctcgccgcgcctgcagttc
agcgaggacttcgaggccagccctgccgacatgctcgaggcagcctgccgcatgaagctt
gaaggcgtgatcggcaagcgcgccgacgccagctatgtcagcgcgcgcaccaatacgtgg
atcaagctgaaatgcaccttgcgccaggagttcgtggtggcgggtttcaccgacccgaag
ggcagccgcgccggcatcggctcattgctgcttggcgtgcacgacagcggcgggcggctg
cgctacgcgggcaatgtcggcaccggcttcgacacgcgcaccctggctgcgctgcgcacg
cagctggacgcgttgcgcaccgattccgcgccctttgagagcgtgccggcaggcgtgaaa
gggcactgggtgcggccaaagctggtggccgaagtctcgttcggcagctggacccgcgaa
ggccgcgtgcgccatgccgtcttccacggcctgcgcaccgacaagcccgcgcgcgcggtg
tcggtggagcggccggcaacgccggcagccaagggcaagccggcgccaaaagcagcaaag
cacaccgggacacagccgaaggccggcaccgccgcaaagcgtgcaaccgccgccggcggc
aaagtcgcgatcagccatgccgggcgcgtcatcgacacagcatccggcctgaccaagggc
gacctggtgcgctactacgaacgcgccgcaccactgatgttgccgcacctgcgcgggcgt
ccgatcgcgatggtgcgcgcgccgtcgggcgtgggcggcgagcagttcttccagcgccat
ggcgacacgctgcgggtggacggcctcaacgtgcttgattcgggcctgtggcccgggcat
cccgcgctgctggaaatcgcgtcagccgaagcgctggtgtccgcggcacagctcaacgtg
gtggagttccacacctggaacgccagcaaacgcagcctcgaccgccccaaccggatcgtc
ttcgacctggacccgggcgaaggcgtgccctgggcacaaatgcaggaagccgccacgctg
atgaaggcgctgctcgatgaactcggcctcgccagcttcctgaagaccagcggcggcaag
gggctgcacgtggtggtgccgatcacgccgcgcgcgggctgggacgaggtgaaggcgttc
gcgcatgacgtggtgcgccatgtcgccaagaccattccgcagcgcttcgtggccaagagc
gggccacgcaaccgcgttggcaagattttcatcgattacctgcgcaatggcgtcggtgcc
accacagcggcggcattctcggcgcgggcacgcccggggctgggcgtgtcgatgccggtg
tggtgggaagaactcgataccctgcaaggcgcggcgcagtggaccgtcgccaatgcgggc
ccaaggctcgacgccctggccgccgacgacccatgggcggactacgccgacacccggcag
gcgatcacgcgcgccgctgcgcgactggctcgcaccggctag
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