Cupriavidus necator N-1: CNE_BB1p08120
Help
Entry
CNE_BB1p08120 CDS
T01564
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cnc
Cupriavidus necator N-1
Pathway
cnc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cnc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CNE_BB1p08120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnc03400
]
CNE_BB1p08120
Enzymes [BR:
cnc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CNE_BB1p08120
DNA repair and recombination proteins [BR:
cnc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CNE_BB1p08120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEI82226
UniProt:
F8GU22
LinkDB
All DBs
Position
BB1p:complement(835654..838182)
Genome browser
AA seq
842 aa
AA seq
DB search
MPMATTPGTSKARARTAERSPNLDRYQKKRNFSVTSEPAGTRQRLQKANPLRFVVQKHWA
RRLHYDFRLELDGVLLSWAVPKGPSCDPSEKRIAVHVEDHPLDYANFEGEIPAKQYGAGS
VIVWDRGTWEPIGDPREGMAAGKLLFDLYGEKLAGRWELVRIAKPGDQSEQWILFKKRDA
WARPLAEFDVLAALPDSVIAKPLGTLTQTSQGSTEMASDSAITDAPLAPLPAKLGPQLAN
PAPALPTGTGWVIETKFDGYRILARISDARVTLFTRNGHDWTRMLRSLAAEIEKLDISEG
WLDGEIVVLRDGMPDFNALQNAIDGHRSDAIVFFAFDLPFWEGRDLRNVPLAQRRAKLGE
LVGDRSERVRFSEAFDAPPAQIFQAACQLGLEGLMFKRADASYVSARTQTWLKAKCKLRQ
EFVIGGFSDRSGAAAEVGKLLLGVYAHRELRYVGGVGTGWDSATATELRRRLAALEVDRS
PFSTEAHSSRRWGGGREAAVRWVKPTLVAEVEFSDWTPEGQVRQASFKGLRADHPAKSIR
REAIQTTVTPHGVSAIKVTNPDRVIDKSTGITKVELVRYYESVAERMLPHLKDRPLSLVR
APDGIDAPTFFQKHAETAMPGLTEQPQSLWPGHAALLTADSAEAIVAAAQMNAVEFHTWN
STARHIACPDRVIFDLDPGEGIAWETMVEAAMLVRTLLDELGLQSWLKTSGGKGLHVAVP
LAPQRSYDEVKAFSRAAVKHLAVTLPQRFTARSGAANRKGRIFVDYLRNGFSQTTAAAFS
ARARPGLGVSIPVSWEQLTKLKSGAQWTIRDAREYLSFQVADPWQSYWEARQSLTAAIER
LS
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgcctatggcaacgaccccagggacgtcaaaggctagagctcgcactgcagagcgatcg
cccaacctcgaccgctatcagaagaagcgcaacttcagcgtcacttcagagccggcggga
acacgacagcggctccaaaaggccaatccgttacgtttcgtggtccagaagcattgggca
cggcggctgcactatgacttccggcttgaactcgatggtgttctgctcagttgggcagtg
cccaagggccctagctgcgatcccagcgaaaagcgcatcgcggtccatgtggaggaccac
ccgctcgactatgccaattttgagggagagatcccggccaaacagtatggcgccggctcg
gtgatcgtctgggatcgtggcacgtgggagccaatcggcgatccgcgtgaaggtatggcc
gcaggcaagttgctcttcgacctgtatggagaaaagctggcaggtcgttgggaactggta
cgcatcgccaagcccggtgaccaatcagaacagtggatcctgttcaagaagcgagatgcc
tgggcgcgaccactggcggagttcgacgtgttggcagctttgccggatagcgtcatcgca
aagccactgggtacgctgactcagacgtcacagggctcaaccgaaatggcttccgattcc
gccatcacggacgccccgctcgcccccttgccggctaagctcgggccacagcttgcgaac
ccggcacccgcacttccgactggtaccgggtgggtcatcgaaaccaagttcgacggctat
cgcatcctggccaggatctccgacgcccgggtgacgctctttacccgcaatgggcatgac
tggacccggatgctgcgttcgctggccgcggagatcgagaagctcgacatctcggaaggc
tggctggacggcgagatcgtcgtgctgcgcgatggcatgccagatttcaatgccttgcag
aacgccatcgacgggcatcgcagcgacgcaatcgtcttcttcgccttcgatctacccttc
tgggaaggccgggatttgcgcaacgtgcccctggcccagcgtcgggctaagctgggggag
cttgtcggagatcgctccgaacgcgtgcgctttagcgaggccttcgatgcccccccggcg
cagatcttccaggcggcgtgccagctcggtctcgaaggcttgatgttcaagcgggcggac
gcctcctatgtttccgcgcgcacgcagacgtggctgaaggccaaatgcaaactgcgtcag
gagtttgtgattggcgggttctcggaccgcagtggtgcggcagccgaggtaggcaagcta
ttgcttggtgtgtatgcgcacagggaactccgttacgtcggcggcgttggaaccggctgg
gacagcgcgacggcgacagagctcaggaggcgcttggccgccttggaggttgaccgaagt
cccttttcgacggaggcgcattccagccggcgatggggtggaggtcgagaagccgctgtt
cgttgggtaaaacccaccctcgttgcagaagttgagttttccgattggacccctgaaggc
caggtgcgtcaagcctcgttcaaaggcctgcgcgccgatcatccagctaagtcgatccgg
cgagaggcgatccagactaccgtgacgccgcacggtgtgagcgccatcaaggtcaccaat
ccggaccgtgtcatcgacaaatccacaggtatcacgaaggtcgagttggttcgctactac
gagagcgtggcggagcggatgctgccccacctcaaagatcggccgctatccttggtgcgc
gcgccggatggcattgatgcgccgacgttctttcagaagcacgcggaaacggcgatgccc
ggcctcaccgagcaaccccaatccctttggcccggccatgccgcattactcactgctgat
tcggcagaagcaatcgtcgccgctgcccagatgaatgcggttgagtttcatacgtggaat
tcgacggcccgccacatagcgtgtcccgaccgagtcattttcgacctcgatcctggcgaa
gggattgcatgggagacgatggtcgaagccgccatgctggtgcgcacgctgctggatgaa
ctggggctgcagtcctggttgaaaacgagcggcggcaaggggctgcacgtcgccgtgcca
ctggcgccgcagcgttcctacgatgaagtgaaggcgttttcgcgggccgccgtcaagcac
ttggcggtcaccctgccccagcgcttcaccgcccgctctggggcggccaaccgcaagggg
cggattttcgtggattatctgcgcaacggcttctcgcaaaccaccgcagccgcgttctcg
gctcgagcgcggccagggctcggtgtctccatcccggtgtcctgggagcagcttaccaag
ctgaaaagtggcgctcagtggactatccgcgacgcccgggaatacctcagtttccaagtg
gcggatccctggcagtcttactgggaggcacgccaaagtttgaccgccgccatcgaacga
ttaagctga
DBGET
integrated database retrieval system