KEGG   Cupriavidus necator N-1: CNE_BB1p08120
Entry
CNE_BB1p08120     CDS       T01564                                 
Name
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cnc  Cupriavidus necator N-1
Pathway
cnc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cnc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CNE_BB1p08120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cnc03400]
    CNE_BB1p08120
Enzymes [BR:cnc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CNE_BB1p08120
DNA repair and recombination proteins [BR:cnc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CNE_BB1p08120
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AEI82226
UniProt: F8GU22
LinkDB
Position
BB1p:complement(835654..838182)
AA seq 842 aa
MPMATTPGTSKARARTAERSPNLDRYQKKRNFSVTSEPAGTRQRLQKANPLRFVVQKHWA
RRLHYDFRLELDGVLLSWAVPKGPSCDPSEKRIAVHVEDHPLDYANFEGEIPAKQYGAGS
VIVWDRGTWEPIGDPREGMAAGKLLFDLYGEKLAGRWELVRIAKPGDQSEQWILFKKRDA
WARPLAEFDVLAALPDSVIAKPLGTLTQTSQGSTEMASDSAITDAPLAPLPAKLGPQLAN
PAPALPTGTGWVIETKFDGYRILARISDARVTLFTRNGHDWTRMLRSLAAEIEKLDISEG
WLDGEIVVLRDGMPDFNALQNAIDGHRSDAIVFFAFDLPFWEGRDLRNVPLAQRRAKLGE
LVGDRSERVRFSEAFDAPPAQIFQAACQLGLEGLMFKRADASYVSARTQTWLKAKCKLRQ
EFVIGGFSDRSGAAAEVGKLLLGVYAHRELRYVGGVGTGWDSATATELRRRLAALEVDRS
PFSTEAHSSRRWGGGREAAVRWVKPTLVAEVEFSDWTPEGQVRQASFKGLRADHPAKSIR
REAIQTTVTPHGVSAIKVTNPDRVIDKSTGITKVELVRYYESVAERMLPHLKDRPLSLVR
APDGIDAPTFFQKHAETAMPGLTEQPQSLWPGHAALLTADSAEAIVAAAQMNAVEFHTWN
STARHIACPDRVIFDLDPGEGIAWETMVEAAMLVRTLLDELGLQSWLKTSGGKGLHVAVP
LAPQRSYDEVKAFSRAAVKHLAVTLPQRFTARSGAANRKGRIFVDYLRNGFSQTTAAAFS
ARARPGLGVSIPVSWEQLTKLKSGAQWTIRDAREYLSFQVADPWQSYWEARQSLTAAIER
LS
NT seq 2529 nt   +upstreamnt  +downstreamnt
atgcctatggcaacgaccccagggacgtcaaaggctagagctcgcactgcagagcgatcg
cccaacctcgaccgctatcagaagaagcgcaacttcagcgtcacttcagagccggcggga
acacgacagcggctccaaaaggccaatccgttacgtttcgtggtccagaagcattgggca
cggcggctgcactatgacttccggcttgaactcgatggtgttctgctcagttgggcagtg
cccaagggccctagctgcgatcccagcgaaaagcgcatcgcggtccatgtggaggaccac
ccgctcgactatgccaattttgagggagagatcccggccaaacagtatggcgccggctcg
gtgatcgtctgggatcgtggcacgtgggagccaatcggcgatccgcgtgaaggtatggcc
gcaggcaagttgctcttcgacctgtatggagaaaagctggcaggtcgttgggaactggta
cgcatcgccaagcccggtgaccaatcagaacagtggatcctgttcaagaagcgagatgcc
tgggcgcgaccactggcggagttcgacgtgttggcagctttgccggatagcgtcatcgca
aagccactgggtacgctgactcagacgtcacagggctcaaccgaaatggcttccgattcc
gccatcacggacgccccgctcgcccccttgccggctaagctcgggccacagcttgcgaac
ccggcacccgcacttccgactggtaccgggtgggtcatcgaaaccaagttcgacggctat
cgcatcctggccaggatctccgacgcccgggtgacgctctttacccgcaatgggcatgac
tggacccggatgctgcgttcgctggccgcggagatcgagaagctcgacatctcggaaggc
tggctggacggcgagatcgtcgtgctgcgcgatggcatgccagatttcaatgccttgcag
aacgccatcgacgggcatcgcagcgacgcaatcgtcttcttcgccttcgatctacccttc
tgggaaggccgggatttgcgcaacgtgcccctggcccagcgtcgggctaagctgggggag
cttgtcggagatcgctccgaacgcgtgcgctttagcgaggccttcgatgcccccccggcg
cagatcttccaggcggcgtgccagctcggtctcgaaggcttgatgttcaagcgggcggac
gcctcctatgtttccgcgcgcacgcagacgtggctgaaggccaaatgcaaactgcgtcag
gagtttgtgattggcgggttctcggaccgcagtggtgcggcagccgaggtaggcaagcta
ttgcttggtgtgtatgcgcacagggaactccgttacgtcggcggcgttggaaccggctgg
gacagcgcgacggcgacagagctcaggaggcgcttggccgccttggaggttgaccgaagt
cccttttcgacggaggcgcattccagccggcgatggggtggaggtcgagaagccgctgtt
cgttgggtaaaacccaccctcgttgcagaagttgagttttccgattggacccctgaaggc
caggtgcgtcaagcctcgttcaaaggcctgcgcgccgatcatccagctaagtcgatccgg
cgagaggcgatccagactaccgtgacgccgcacggtgtgagcgccatcaaggtcaccaat
ccggaccgtgtcatcgacaaatccacaggtatcacgaaggtcgagttggttcgctactac
gagagcgtggcggagcggatgctgccccacctcaaagatcggccgctatccttggtgcgc
gcgccggatggcattgatgcgccgacgttctttcagaagcacgcggaaacggcgatgccc
ggcctcaccgagcaaccccaatccctttggcccggccatgccgcattactcactgctgat
tcggcagaagcaatcgtcgccgctgcccagatgaatgcggttgagtttcatacgtggaat
tcgacggcccgccacatagcgtgtcccgaccgagtcattttcgacctcgatcctggcgaa
gggattgcatgggagacgatggtcgaagccgccatgctggtgcgcacgctgctggatgaa
ctggggctgcagtcctggttgaaaacgagcggcggcaaggggctgcacgtcgccgtgcca
ctggcgccgcagcgttcctacgatgaagtgaaggcgttttcgcgggccgccgtcaagcac
ttggcggtcaccctgccccagcgcttcaccgcccgctctggggcggccaaccgcaagggg
cggattttcgtggattatctgcgcaacggcttctcgcaaaccaccgcagccgcgttctcg
gctcgagcgcggccagggctcggtgtctccatcccggtgtcctgggagcagcttaccaag
ctgaaaagtggcgctcagtggactatccgcgacgcccgggaatacctcagtttccaagtg
gcggatccctggcagtcttactgggaggcacgccaaagtttgaccgccgccatcgaacga
ttaagctga

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