Cryptococcus neoformans var. neoformans JEC21: CNC00780
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Entry
CNC00780 CDS
T00243
Name
(RefSeq) histone deacetylase clr3, putative
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cne01009
]
CNC00780
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cne03019
]
CNC00780
04131 Membrane trafficking [BR:
cne04131
]
CNC00780
03036 Chromosome and associated proteins [BR:
cne03036
]
CNC00780
Enzymes [BR:
cne01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
CNC00780
Protein phosphatases and associated proteins [BR:
cne01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
CNC00780
Messenger RNA biogenesis [BR:
cne03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
CNC00780
Membrane trafficking [BR:
cne04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
CNC00780
Chromosome and associated proteins [BR:
cne03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
CNC00780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Arb2
DUF1749
Ser_hydrolase
Motif
Other DBs
NCBI-GeneID:
3256392
NCBI-ProteinID:
XP_569378
UniProt:
Q5KL48
LinkDB
All DBs
Position
3:complement(join(219495..219679,219791..219878,219945..220205,220283..220378,220444..220510,220576..220632,220715..220871,220961..221150,221207..221334,221412..221524,221594..221746,221806..222094,222155..222521))
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AA seq
716 aa
AA seq
DB search
MAHTAAMHTGPPPAAPTNVGNSPSHTTMAMPGAAARIARTGYIYDPLMMLHCMEGYMPTA
ENVMDNGDGHPEDPMRIKRIFTRLAEQGLIRRMKRLDFEEVKFEQVLLVHGEEMWDKVQA
TELLSDQQIQDMKEYYDQLSLYVCRETAHCARLSAGGVIQACRSVCKNEVRNAFAIVRPP
GHHAEPNEHMGFCFFNNVAVATREMQREGLAKKVLILDWDVHHGNGTQRAFWHDGDVLYM
SLHRHEGGTFYPNSDFGSLNMVGDGEGVGKSVNIPWPGPGFGDADYIYAFQRIIMPIAYE
FDPDLVIISAGFDAADGDMLGQCRVTPAAYGHMTHMLSSLAGGKLVVALEGGYNLRAISD
SALAVARVLLGEIPPELGIMRASEAATEVVYQVALEQSKYWKCIDVKACEPPEVTELENG
TSPVYTIPDLLKIHRAHHMFTKHQLYQIPLASQELEAAFGGQIICNENMYEVGEKGVLVV
FVHDFGNLRVETDGARSTNIHLANSYLLDTSDAVVSWVKTKGYNIIDVNILKQLPTEYPE
GPKMVVKQANDMESKLMKYIWDNYIELSECEKVVFIGHGTGCQAIMDLVNARDVELKVKA
VVQVAGLHSLVRPNPSNKEKLSWFKQCNQIYVPAEHVVLEDEKVKRRLGDAVFTSQKAKV
VDVLNDVLPRIKAFVESKVEDGLAPRAHSGLDGLYGLGGAGAGGELVVVNGHVHVG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcacacacagccgccatgcacactggcccgccccccgccgcccccacaaacgtcggc
aactcgcccagccatacaaccatggccatgccaggcgcagcagcacgtatcgcccgtacc
ggctacatctacgaccctctcatgatgctgcactgcatggaaggctacatgcccaccgca
gaaaatgtaatggataacggcgacggacacccggaagatcccatgcggatcaagaggatc
tttaccaggctggcggagcaagggttgatcaggcggatgaagaggctggattttgaagag
gtcaagtttgagcaagtcttgctggtgcatggcgaggagatgtgggataaagtgcaggct
acggagctgttgagcgatcagcaaattcaagatatgaaagagtactacgatcagctatcc
ctctacgtctgccgtgagactgcccactgtgctcgtctttctgcgggaggtgtgattcaa
gcatgtcgatcagtctgcaagaatgaagtgcgcaacgcctttgccatcgtacgtccgccg
ggccatcacgcagagcccaacgaacatatgggtttctgtttcttcaacaacgttgcagtg
gctaccagggagatgcagagggaagggttggccaaaaaggtcttgatcttggattgggac
gtccaccatggtaacggtacacaaagagcattctggcatgatggtgatgtactttacatg
tcattacatagacatgaaggaggaacattctaccccaacagcgatttcggatctctcaac
atggtcggtgatggtgaaggtgtcggcaagtctgtcaacatcccctggcctggaccgggt
ttcggtgatgccgactatatctatgctttccagcggatcatcatgccaatagcatacgag
ttcgaccccgatctcgtcatcatttctgccggattcgatgctgcggacggagacatgctc
ggtcaatgtcgtgtcacccctgcagcttacggacatatgacacatatgctcagctcattg
gctggtggcaagcttgtcgtcgctcttgaaggtggatacaatctccgagccatctccgat
tccgccctcgccgtcgcccgtgtcctcttgggtgaaatcccgcccgagctgggcatcatg
cgagcatccgaagcggctaccgaggtggtctaccaggtcgcgcttgaacagagcaagtac
tggaagtgcatcgatgtaaaggcttgtgaaccgcctgaagttaccgagcttgagaatggc
acttctcccgtgtatacaatcccagacctactgaaaatccatcgcgcacaccacatgttt
accaaacaccagttgtatcaaataccattggccagccaagaattagaagctgcatttggc
ggtcagatcatctgcaatgagaatatgtatgaagttggagaaaagggagtgctggtggtg
tttgtccatgattttggtaacctgagagtggagaccgacggcgcaaggtcgaccaacatc
cacctggcgaacagctaccttctcgatacgagcgatgcggttgtctcatgggttaaaaca
aaaggctacaacatcatcgatgtcaatatcctaaagcaactacctaccgaataccccgaa
ggccccaagatggtcgtgaaacaagccaacgacatggaatccaaattaatgaagtacatt
tgggataattacattgaactgtccgaatgcgaaaaggtcgtgttcatagggcacggtaca
ggctgtcaggcgatcatggatcttgtcaatgcgagggatgtcgagctcaaggtgaaggct
gtggtgcaagtggccggcttacattccttggtcagaccaaatccgtcaaataaggaaaag
ttgagctggttcaagcagtgtaatcaaatctacgtgcctgccgagcatgtggtattggaa
gatgaaaaggttaagcggagattaggcgacgcggtgtttacatcccaaaaagcaaaagtc
gtcgacgttctcaacgatgtccttccgcgaatcaaggcctttgtcgaatccaaagtcgaa
gatgggcttgcaccccgcgcgcattcgggtctggatggcttatacggtctaggaggtgct
ggtgctggtggagagctggtagttgttaatggacatgtacatgtgggatga
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integrated database retrieval system
