Contarinia nasturtii (swede midge): 116337885 Help Entry 116337885         CDS       T08003                                  Name (RefSeq) roquin-1 isoform X1   KO K15690   RING finger and CCCH-type zinc finger domain-containing protein Organism cns  Contarinia nasturtii (swede midge) Brite KEGG Orthology (KO) [BR:cns00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:cns03000]     116337885    04121 Ubiquitin system [BR:cns04121]     116337885 Transcription factors [BR:cns03000]  Eukaryotic type   Zinc finger    Cys3His zinc factors     116337885 Ubiquitin system [BR:cns04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     116337885 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-CCCH zf-RING_UBOX zf-RING_2 zf-C3HC4 zf-C3HC4_4 zf_CCCH_4 zf-CCCH_4 zf-RING_10 Motif Other DBs NCBI-GeneID:  116337885 NCBI-ProteinID:  XP_031618688 LinkDB All DBs Position Unknown AA seq 1238 aa AA seqDB search MVMRREASQFILPSKAICFVRMPIQAPQWTEFLSCPVCCHQFAVKLRPPISLGCGHTICK TCLANLHRKQCPFDQAAIITDLDNLPINNALLQLVSNNNLTQKEPTSSNATETCLSSTIH TSSQETENCSSSAAGSTVCDTEPLWGSVRKLTAEQLECYNISKKCIEDLALYLKPFNNGN ITSLLSRPMQRKLVTLINCQLVEAEGRSRALRAARSLGERTVTELILQHQNPQQLSANLW AAVRARGCQFLGPAMQEEVLKLVLLALEDGSALSRKVLVMFVVQRLEPHFPQASKTSIGH VVQLLYRASCFKVSKRDGDSSLMQLKEEFRTYEALRREHDAQIVQIATEAGLRIAPDQWS ALLYGDTGHKSHMQSIIDKLQTPQSFAQSVQELVIALQRTNDPANLAGLRAHLKQLTNID PTAENDSWQELAASLDAVKQVVIGLVEFVQHHGNRKLQDNSYVAHNGKYKISMCRDLSMR AICPRGASCTFAHSEEELEKYRAKNRKLHAKTPIIASTNHLNVESTDYLTDHSHNSNYTY MSSSNEDISPQRHNNNEKLPRPAMISGALVQQSQFEHGMYKKSPVPLAQQSPNLKGSTIQ IGKSSINSLHPSTSFDPKSQRRSFNAQQNQNYSISPMSIPPPPPPLPSIQSHMYAGSNQD NRSHLDSMNSRHYTQQKYQPKIPIIYSSPTNYPQQPHASGKFTMNEAYNKPYIKATMSPH MRSPQHPSQQQPTKYHMDNSNSVNNKIDLKPKYQQKLQFSSTNNNYQYGDSSMNDIRMLQ SLEMRRQEIIAKLKQYDNNLKQTTQQAVNGNNNAYHVSNQVAPTTNDQSKNNNSSNSINN NDATISATNPSHSHVKSDLINNYWNNTIAGNEFGYQNTLQQPQNNSSNRSPVELAYANPI LCDNQNQNSNSDMSRDMFVRSDSILTDDDYVPFDAPAQSKYGPISRMSAKTSPYSTGLSS DNLTVPNTTTASSTLTDPSVWLYNNLQKSPNQYGYQSNDINPMMNENITRDGFGPINTCT NDDEQNILTMELKLIEQKLMGSSNIASTDMNKFTSSTSSQSSIEQFLWSPSNVVVSPGNQ SNQLLMKFWNNPKHHHQQQQQQQQQAQQQQQQQQQQTGCHKTVTSMPSVGRNAKMSGQPI VGYNQNPCDETTNEPNELDAKLNEVHSPNRDYKQANSSNNTNNLTIVHSTAPKDFGCDDT YEDGIDKDMRDLERRLESELEEHEKLWSPEEETPISQT NT seq 3717 nt NT seq  +upstreamnt  +downstreamnt atggtcatgcgccgagaggccagccaatttattttgccatcaaaggccatctgtttcgta agaatgccgattcaggcgccacagtggacagaatttttgtcttgtccggtatgctgccat cagtttgcagtgaaacttcgtcctccaattagtttaggatgtggtcacaccatatgtaaa acatgtttagcgaatttacatagaaaacaatgcccatttgaccaagctgcaataatcaca gatttagataatttaccaataaataatgcacttttacaattagtaagtaataacaattta acacaaaaagagccgacttcctcgaatgcaaccgaaacttgtttgtcctcaacaatccac acatcatcgcaagagacggagaattgttcatcgtccgcggctggttcgactgtttgcgat acagaaccattgtggggcagtgttcgaaaactaactgccgaacaattggaatgctataat atttcgaaaaaatgcatcgaagatttggcattgtatttaaaaccgttcaacaatggcaac atcacaagcctattgtcacggccaatgcaacgaaaattggtaacgctaatcaattgccaa ttggttgaagctgaaggtcggagtcgtgcattgcgtgccgctcgttcgcttggcgaacga accgttactgagctcattttacaacatcaaaatccacaacagctgagtgccaatctatgg gccgccgtacgtgctcgcggatgtcaatttttaggacctgcaatgcaggaagaagtactt aaactggtgctgttggcattagaagacggttcggctctatctcgtaaagtgttagttatg tttgttgttcaacgtctcgaaccacattttccgcaagcatcaaaaacaagtatcggccat gtcgtgcaattgttatatcgtgccagctgctttaaggtatcaaaacgcgacggtgattcg tcacttatgcaattgaaagaagaatttcgaacatacgaagcattacggcgtgaacatgat gcacagattgttcaaattgctaccgaagctggtcttcgaattgcacccgatcaatggtcg gctctgttatacggtgacaccggccataaatcccatatgcaaagcatcattgacaaatta caaacaccacagtcatttgctcaatccgttcaagagttagttattgcattgcaacgcacc aacgatccggcaaatttggccggtttgcgagcacatttgaagcaactaacaaacattgat ccaacggctgaaaatgattcgtggcaagaattggccgcctcattggatgccgtcaaacaa gttgttattggtttggtggagtttgttcaacatcatggcaatcgaaaattacaagataat agctatgtggcacacaatggcaaatataaaattagcatgtgccgtgatctatctatgcgg gccatttgcccacgcggtgccagttgtacatttgcacattcggaagaagagctggaaaag tatagagccaaaaatcgtaaactgcatgctaagacaccaatcatcgctagcactaatcat ctgaatgtagaatcaaccgattatttaaccgatcacagtcacaacagcaactatacctat atgtcatcatcaaatgaggacatatccccgcaaagacataataacaatgaaaaactacct cgtccggctatgatatcaggtgcgctggtacaacaatctcaattcgagcatggaatgtat aaaaagtcaccagttccattggcacagcagagcccgaatttaaaaggttccacaattcaa attggcaaatcatcgatcaactctttgcatccttcgacatctttcgatccaaaatcccaa cgtcgttccttcaatgcgcaacaaaaccaaaattattcaatttcgcctatgagtatacca ccgccaccacctccactgccttcaattcagtcacatatgtatgccggcagcaatcaggat aatcgatctcatttggattctatgaattcaagacattatacgcagcaaaagtatcaaccg aagattccgatcatttactcctcaccaacgaactacccgcaacaaccgcatgcatctggc aaatttactatgaacgaggcttataataagccatacatcaaagcaacaatgtcaccgcat atgagatcaccgcaacatccaagccaacaacaaccaactaaatatcatatggacaatagt aacagtgttaacaataagattgatcttaaaccgaaatatcaacagaaattgcaattttca tcaacaaataacaattaccaatatggtgattcatcgatgaatgatattcgaatgcttcaa agcttggaaatgagacgccaagaaataatagctaaactaaaacaatatgataataacttg aaacaaacaacgcaacaagctgtgaacggaaacaataatgcataccatgtatcaaatcaa gtagcaccgacaacgaacgatcaaagcaaaaataataatagttccaatagcatcaataat aatgatgcgaccatcagtgcgacgaatccgagtcattcacatgtgaaaagtgatttaatc aacaattattggaataatacaattgctggcaatgaatttggttatcaaaatacactacaa cagccacaaaataatagtagcaatcgttcgccggttgaattggcctacgccaatccgatt ctatgtgataaccaaaaccaaaactcaaactctgacatgagtcgtgatatgtttgtgcga tcggattcaatactaaccgacgatgattatgtgccatttgatgcaccggcacaaagtaaa tacggacctatttcacgaatgtcggccaaaacgtcaccgtattcgacaggattatcaagt gataatttaactgtaccgaatacgacaaccgcatcgtcaaccttaaccgatccatcagta tggctctataataatttgcaaaaatcaccaaatcagtacggctaccaatcgaatgatata aatccaatgatgaacgaaaacatcacaagagatggattcggaccaatcaacacatgcacc aatgatgacgaacaaaacatactgacaatggaattgaaattgattgaacagaaattgatg ggaagctcgaatatcgcatccaccgacatgaacaagtttacatcgtccacatcatcgcaa agttcaattgaacaatttctatggagtccgtcaaatgttgtggtatcgcctggaaaccag tcaaatcaactgcttatgaaattctggaacaatccaaaacatcatcatcaacaacagcag caacagcaacaacaagcccaacagcagcagcagcaacaacaacagcaaaccggttgccat aaaaccgtgacatcaatgccatcagttggtcgaaatgcaaaaatgagcggtcagcccatc gttggctataatcaaaatccatgtgacgaaacaacaaacgaaccgaacgaattagatgct aaattaaatgaagtccattcgccaaatcgcgactataaacaggctaacagtagtaataac acaaacaatttgactattgtgcattcaacagcgccaaaagactttggctgtgatgataca tacgaagatggaatcgataaagatatgcgggacttggaacggcgcttagaatccgaatta gaagagcatgaaaagctttggtcaccggaagaagaaacgccaatatcacaaacataa

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