Contarinia nasturtii (swede midge): 116349847
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Entry
116349847 CDS
T08003
Name
(RefSeq) uncharacterized protein LOC116349847
KO
K15542
polyadenylation factor subunit 2
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116349847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116349847
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116349847
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
Pep3_Vps18
PTB
Telomerase_RBD
Motif
Other DBs
NCBI-GeneID:
116349847
NCBI-ProteinID:
XP_031637307
LinkDB
All DBs
Position
Unknown
AA seq
1295 aa
AA seq
DB search
MSDYIVERLDRIAKANRNKVPKVNNIGKFEVKKRAQYENEVIKCVSKLKAIPMSYGDRFI
PRRYFRKKTPTLTSKSLQPVDENENDIFTVKSLPYYWRLHNYRINIEMQLGLNENEKLLH
FHDNTTQRNDDQMPNMNLTKIEYQVPSKSTEELDWSCLPRAKPLSYNDSTHDMPGFDDYI
NGNNIIDWSSRGQIAASFDSSLVLWGPPTKTDRETATVLYEIKNVRALKYAPDGKKLALS
VSHSDSSLLQIWDISDKMSIYTRKSCTFRKERVYEAIRCIEWEPNAKNIICGMSSGTVYI
ISYPSLKTLHRYESHKASISNIKYSINITYIAITDLLGNLSILRNNVNYELYLKNKKAHY
IAWHPWVETNLLIGYKSPASIHLLDLKTKTTIAHYRRNDLQHSLCAMSINPLSAELVVSF
SYQENDVTHSNILVMASMNRIVDNISAHQEAVYFILWDPTGTKVATAGQDESLNIWHFFG
KSQKKADELKKIHDNIKIPKNSKLNLNNMFMMCQIKMTEFLQPPPTTNFSVPPPPVPQQP
IHASPSQPNQSPSAPHYSSYQRERHYHGGFSGKNTHYSRSYNNFRGPNNMSQDDFDGKRL
RKSVMRKTVDYNSSIVRELENRIWQRDYRDRRALQPESIYVSEMLPPPSYMDNPINAVTT
RFVKTATNKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDVPVRTMV
WSHNDNWMITGDHGGYVKYWQSNMNNVRMFQAHKEPVRGISFSPSDNKFATCSDDGTLRV
WDFLRCQEERVLRGHGADVKCVHWHPQKALIVSGSKDNQQPIKLWDPKSGQALATLHAHK
STVMDLKWNDNGNWLVTASRDHLLKLFDLRNLREEVQVFRGHKKEASAVSWHPIHEGLFS
SGGSDGSILFWNVGTDKEVGSIDVAHDSIVWTLAWHPLGHILCSGSNDHTIKFWTRNRPG
DQMRDKYNLNTLPAALQGAEEYEIDEHNITIPGMGPEDKIDFSESLMADKGFIPGLDLDT
SNLGENKRDKDKKVPYSKPIPRNFQAQWNDTGFANEDASKEIKDVISQIVENKQGGVPMP
KPIPTAIVVYGKMIEVKPGSKLEQVIGDGAEALNVFIDSGQIEELSDLIPNEVSDDSDID
DENNSNEPREKRTKVIKNHNAQIIYKSQETNMLIPSLMTINVPNVAEPESPWSHPPPSNE
NWNNVPPMFNANTPPSLLNLNVAPPFDDSINPPTGNWQQGRADFNNRAAKQDGTKRRNRD
SDGNRISRFDRGERPSRFDNNDSARNNQRRNNRRI
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattatattgtggaacgtttggatcgcatagcgaaggcgaatcgaaacaaagtg
ccaaaagttaacaatatcggcaaattcgaagtgaaaaaacgcgcacagtacgaaaatgag
gttataaaatgcgtatcaaaactgaaagccattccaatgtcatacggtgatcgttttata
ccacgcagatattttcgcaagaaaacaccaactctgacatcaaaaagtttgcagccggtg
gacgagaacgaaaatgatattttcactgttaaaagtttgccatattattggcgtttgcac
aactatcgtataaatattgaaatgcaacttggcttaaatgaaaatgagaaactattgcat
tttcatgataacacgacacaacggaatgacgatcaaatgcccaacatgaatttaacgaaa
atcgaatatcaagtgccaagtaaaagcaccgaagaactggattggtcatgtttaccccga
gcaaagccgctatcatacaatgattccacacacgacatgcctggatttgatgactatatt
aatggaaataatatcatcgattggtccagtcgaggtcaaattgctgccagttttgattct
tcgttagttttatggggcccaccaacgaaaacggaccgagaaactgcaacggtgttgtac
gaaataaagaatgtccgagcattaaagtacgcacctgatggtaaaaaattagcattgagc
gtgagtcactctgattcatcacttcttcaaatatgggatatcagcgataaaatgtcgatt
tatacgagaaaatcgtgtaccttccgcaaagagcgggtatatgaagcaatccgatgcatt
gaatgggaaccgaatgcaaaaaatatcatttgcggcatgtcatcaggaacggtgtacatc
atttcatatccttcattgaaaacattacaccgttacgaaagtcataaggcttccataagt
aacatcaagtattccataaacatcacatacattgcgattactgatttattgggcaatcta
tcgattttgcgaaacaatgttaactacgaactgtatctgaagaacaaaaaagcgcattat
attgcatggcatccatgggtcgaaacaaatctgttaatcggttacaagtcacccgcatcg
attcatctgttggatttgaaaaccaaaacaacgattgcacattatcgtcgcaacgactta
caacattcactatgcgccatgtcaataaatccattatcggccgaattggttgtatcattt
tcgtatcaagaaaacgacgtcacgcacagtaacattctcgttatggcatcaatgaatcgc
atcgtcgacaatatatcagctcatcaagaagccgtttattttatattatgggatccaact
ggaacaaaagtcgccactgccggtcaggatgaatcgctgaatatctggcacttttttggt
aaatctcagaaaaaagcagacgaattaaaaaaaattcatgataacataaaaattccaaag
aacagtaaattaaacttgaataatatgttcatgatgtgtcaaattaaaatgacggagttt
cttcagccaccgccaaccacaaatttcagcgtaccgccgccgcctgttccacagcaaccg
atacatgcatcaccatcacaaccaaatcaatcaccgtctgcaccacattattcgagttat
caaagggagcgtcattatcatggagggttttccggtaaaaatacgcactattcacggtcg
tacaataattttcggggtccgaataacatgagccaagatgatttcgacggaaaacgatta
cggaaaagcgttatgagaaaaactgtggactataattcgtcaattgttcgagagctagaa
aatcgaatatggcaaagagattatcgtgatcgtcgcgctttacagcctgaaagcatttac
gtatctgaaatgctgccacctcccagttatatggataatccaattaatgcagttacgacg
cgattcgttaaaaccgcaacaaacaagatgcgttgtccaattttcacgctggcttggacg
ccagaaggaagacgtctcgtaactggtgccagttcaggtgaattcacattatggaatggg
cttacgttcaattttgagactatactacaggctcacgacgtaccagtacgaacgatggtt
tggtcacacaacgacaattggatgattacaggcgatcacggtggttatgtcaaatattgg
caatcaaatatgaataacgtacgaatgtttcaagctcacaaagaacccgttcggggtata
agttttagtccatccgataacaaatttgcaacgtgtagcgatgatggtacgctacgagta
tgggatttcttgcggtgtcaagaggagcgagttcttaggggtcatggtgccgatgtaaag
tgtgttcattggcatcctcaaaaagcactcatcgtatccggaagcaaagataaccagcag
ccaattaaattatgggatccgaaaagtggccaggctttagctactttacacgctcacaaa
tctaccgtgatggatttgaaatggaatgataacggcaattggctggtaacagcatcacgt
gaccacttattaaaactgttcgatttacgaaatttgcgagaggaagtgcaagtgtttcgt
ggccataaaaaggaagcaagtgcagtttcatggcatccaatacacgaaggcctatttagt
tcgggtggttcagatggatcgattctattctggaatgttggcaccgataaagaagtgggt
tcaatcgatgtagcccatgacagtattgtatggacattggcttggcacccacttggccat
atcttatgctctggatctaatgaccataccattaaattttggactagaaatcggccaggt
gatcaaatgagagacaaatacaacttaaacacattgccggctgcactgcaaggtgccgaa
gaatatgaaattgatgaacataatattacaatacctggcatgggcccagaagataaaatt
gatttcagcgaaagtttaatggccgacaaaggttttattccgggtttggatttagacaca
agcaatttgggtgaaaataaaagggataaagacaaaaaagtcccatacagtaaaccaatt
ccacgaaactttcaagcacaatggaatgatactggcttcgctaatgaggatgcttcaaaa
gaaattaaagatgttatcagtcaaatagttgagaataaacaaggtggagttccaatgccg
aaaccaataccaactgccattgttgtctatggcaaaatgattgaagtgaaacccggatca
aagttagagcaagtgataggtgacggtgcagaagcattaaatgtttttattgattctggt
caaattgaggagttgtctgatttgattccgaacgaagtgagtgacgattccgacatcgat
gatgagaataattcaaatgaaccaagagagaaacgtacaaaagttatcaagaatcataat
gcgcagattatttataagagtcaagaaacaaatatgttaataccatcactgatgacaata
aacgttccgaatgttgctgaacctgaatcaccatggagccatccaccaccttcaaatgaa
aattggaataatgtgccaccaatgttcaacgcaaacacgccacctagcctactaaatttg
aatgtggccccaccatttgacgattctatcaatccacccaccggtaattggcaacaaggc
agagccgacttcaataaccgcgctgcgaaacaggacggtacaaaaagacgcaatagagac
agcgacggaaacagaataagccgtttcgataggggagaaagaccaagtcgattcgataat
aatgacagcgcaagaaataaccaacgtcgaaataatagacggatatga
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