Caldicellulosiruptor obsidiansis: COB47_0964
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Entry
COB47_0964 CDS
T01293
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cob
Caldicellulosiruptor obsidiansis
Pathway
cob03030
DNA replication
cob03410
Base excision repair
cob03420
Nucleotide excision repair
cob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COB47_0964
03410 Base excision repair
COB47_0964
03420 Nucleotide excision repair
COB47_0964
03430 Mismatch repair
COB47_0964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cob03032
]
COB47_0964
03400 DNA repair and recombination proteins [BR:
cob03400
]
COB47_0964
Enzymes [BR:
cob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
COB47_0964
DNA replication proteins [BR:
cob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
COB47_0964
DNA repair and recombination proteins [BR:
cob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
COB47_0964
NER (nucleotide excision repair)
GGR (global genome repair) factors
COB47_0964
MMR (mismatch excision repair)
DNA ligase
COB47_0964
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
COB47_0964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
PASTA
RUBY_RBDX
HHH
RNA_ligase
PADR1_Zn_ribbon
HHH_8
ILEI
Mustang
DUF719
GFRP
Motif
Other DBs
NCBI-ProteinID:
ADL42268
UniProt:
D9TJT6
LinkDB
All DBs
Position
1073704..1075725
Genome browser
AA seq
673 aa
AA seq
DB search
MSEFIKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVLPDSPT
QRVGGKVKEGFKEVVHRVPLLSLSNVFNEGELYDFDRRLKELLGTLDFDYVVEYKIDGLS
VALEYENGLFVRGATRGDGNIGEDVTENLKTIRSIPLRLKEDVSIVVRGEVFMPKDEFIK
LNQEREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCEKELETHAEALEF
LRHLGFKVSPDYVVCRDIKEAFEAIKKIEEKRDLLPFEIDGAVVKLNQLRLRDVAGETAK
SPRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNMDYIR
QKDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQEKIFEMPKKCPVCGADVIKFEDEVAYR
CTGVECPAKSYRLILHFVSRDAMDIAGMGEMIVKTLFERGLIKTPADIYYLKFEDLVNLE
RFGVKSTNNLLKAIQASKNRPLDRLIYALGIRHIGQKAAKTLAEHISSIDDLFTITEEQL
LSLPDFGEKMAKSVVTFFKQEQTRHLIERLKAAGVNTVSEKKAKSDILKGYTFVLTGALS
KYSRNEAKEILESLGAKVTESVSKKTTAVIVGQDPGSKYTKAQQLGVKILNEEDFERLVK
ASSREEVEKMLME
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtttataaaaaagagaataagagaacttgttgatcttatcaattatcatgat
tataaatactatgttgaagataatccggagataagcgactatgaatatgatatgttatat
cgtgagcttgttgagctggaaaaacaataccctgaatatgttttacctgattctcccact
caaagggttggtggaaaggtaaaagaagggtttaaagaggtagtacatcgggtgcctctt
ctttcgctttcaaatgtgttcaatgagggggaactttacgattttgacagaagactaaag
gaacttcttgggacgcttgattttgactatgttgttgaatacaagattgatgggctatct
gttgcgcttgagtatgaaaatggtctttttgtcagaggtgcaacccgtggtgatgggaat
ataggcgaggatgtgacagaaaacttaaagactataaggtctattccgcttaggctaaaa
gaagacgtctccatcgttgtgcgtggagaagttttcatgccaaaggatgagtttataaag
ctcaaccaggaaagggaagagaatgaagagcctctttttgcaaatccacgaaatgcagcg
gcagggtcgcttcgtcagcttgacccaaaaataacagcccaaagaaagcttgatatattt
gtcttcaatgttcagtggtgtgaaaaagagcttgaaacacatgcagaggcgcttgagttt
ttaagacatctgggatttaaagtttcacctgattatgttgtttgcagagatattaaagaa
gcatttgaagctataaagaagattgaagaaaaaagggacttacttccttttgagatagac
ggtgctgttgtgaaactgaaccagctaagactgcgagatgttgcaggagaaacagcaaaa
tcacccagatgggctgttgcttataaattccctccagagaaaaaagagacaaagcttttg
gatattgaggtcaatgtgggacgcacaggtattctaacaccaaccgcaattttggagcct
gtaagaatttcaggctctgttgtctcaagagccactcttcataacatggattatataaga
caaaaagatattaggattggcgatactgttatagtacaaaaagctgcagagattatacct
gaggttgttgaagttgtgttttcaaagcgaacaggacaagagaaaatttttgagatgccc
aaaaaatgtcctgtttgtggagcagatgttataaaatttgaagatgaggttgcttacagg
tgcacaggtgttgaatgccctgctaaaagttacaggttaattttgcactttgtttcacgc
gatgcaatggacatcgctggcatgggcgaaatgattgtaaaaaccttgtttgaaagaggt
cttataaagactcctgctgatatttattatttgaagtttgaagacttggtaaatttagag
cgttttggtgtaaagtcaacaaataatttgttgaaagctatacaggcatctaaaaacaga
ccgttagacaggctaatatatgcgcttggaataaggcacattgggcaaaaagctgcaaag
actcttgctgagcatatatcgtctatagatgacctttttactataacagaagagcagctt
ttaagtcttcctgactttggtgaaaagatggcaaaaagcgttgtgacatttttcaagcag
gaacagacaagacatctaatagaaagactaaaagcagctggtgtaaatactgtttctgaa
aagaaagcaaagtcagatattttaaaaggctacacatttgttttgacaggagctttgtca
aagtatagtagaaatgaagcgaaagagattttagaaagtcttggtgcaaaggtgacagaa
agtgtttctaaaaagacaacagctgtgattgtaggtcaggacccaggaagcaaatataca
aaggctcagcagcttggtgttaagattttgaacgaagaggattttgaaaggttagttaaa
gcttcatcccgcgaggaagtagaaaagatgttgatggagtga
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