Candida orthopsilosis: CORT_0D04630
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Entry
CORT_0D04630 CDS
T02488
Name
(RefSeq) TFIIH and nucleotide excision repair factor 3 complex subunit
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cot
Candida orthopsilosis
Pathway
cot03022
Basal transcription factors
cot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CORT_0D04630
09124 Replication and repair
03420 Nucleotide excision repair
CORT_0D04630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cot03021
]
CORT_0D04630
03400 DNA repair and recombination proteins [BR:
cot03400
]
CORT_0D04630
Transcription machinery [BR:
cot03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CORT_0D04630
DNA repair and recombination proteins [BR:
cot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CORT_0D04630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
AXE1
Motif
Other DBs
NCBI-GeneID:
14540403
NCBI-ProteinID:
XP_003869438
UniProt:
H8X655
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All DBs
Position
4:complement(908760..910262)
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AA seq
500 aa
AA seq
DB search
MSSNLFKSTVNEYLEDLPKPVQSKLYEASATCLSIYRLLSPMAKFYIMSMIFNEKPIAMR
DLTKWCKPSAKKMEFEALKRLESLHLIDYDGKGTHVRLNSIFRSNFRDCLTGSQDPNAFG
SISTGDDVDKVEISFLDKFASHEWETILHFMVGTEGTPTPSSSVLSLLKLGGLMEGESTL
NITNTGFQFLLQDANAQIWTLLLQYLNLTSELNMNPVDVLNFIFILGCLELGKGYSVSNL
SETQVSMLADLKDLGLVYQKSDTSNKFYPTRLATTLTSDSSALKTPSMAVQQALEENEEQ
MMASNSRESIIIETNFKIYAYTNSPLEIAILNLFVQMKTRFSNMVCGQITRESIRNALYN
GITSDQIIKFLETHAHPQMRALAKEKLDKKVEFDASHNINTAGGAPQSKTDGAISQHKLE
VIPPNVVDQIKLWQLELDRIQTVEGYLFKDFANQQEYDTLSNYATELGVLVWGDKVKRKF
FVTKDGMAQVADFANRKLRG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccaacttattcaaaagcacggtcaatgagtatctagaagaccttccgaagcct
gttcagtccaagctatacgaggcatcagcaacatgtctatccatctatcgacttttatca
cccatggctaagttttatataatgtccatgattttcaacgaaaaacctattgctatgaga
gatttaactaaatggtgtaagccactggcaaagaaaatggaatttgaggcgttgaaacga
ttggaactgttacatttgattgattatgatggcaagggaactcatgttcggttgaattcc
atcttcagatcaaattttcgagactgccttactggttcccaagatccaaacgcttttggg
agtataagtaccggtgatgatgtagataaagtcgaaatttcatttttagataagtttgcg
tcacacgagtgggagactattttgcattttatggttggtacagaaggtacaccaactcca
tcgagctctgtcttgagtttgttaaaattaggtggtcttatggaaggagagtccactttg
aatatcacaaatacgggattccaatttcttttacaagatgcgaatgctcaaatatggact
ttacttctacaatacttaaacctaacttcagagttgaatatgaaccctgttgacgtttta
aactttattttcatccttggctgtttggaattgggcaaaggatattcggtgtcgaatttg
agtgagactcaagtgagtatgcttgcagatttgaaggacctcggactagtatatcaaaag
tcagatacttcaaacaagttctatccaactagattagcgacaacgcttacgtctgattca
tcggctttgaagacaccttctatggccgttcagcaagctttggaggaaaacgaggagcaa
atgatggcatctaatagccgagaatcaatcattattgaaactaacttcaagatatacgca
tataccaactcgccattagagatcgcaattcttaatctatttgttcaaatgaagacgcga
ttttcaaatatggtttgtggccaaattaccagagaatcgatcagaaatgcactttacaat
ggaattacatcggatcaaattattaaatttttggaaacacatgctcatcctcaaatgcga
gcgttggccaaggagaaattggataaaaaagtggaatttgatgccagccataatatcaat
acagctggtggtgcacctcaaagtaaaactgatggggcaatatcccaacacaaattggaa
gtgataccacctaatgttgttgatcaaattaaactttggcaattggaacttgacagaata
caaacggttgagggatacttgtttaaagattttgccaatcaacaagaatatgacacgttg
tccaattatgctacagagttgggtgtattggtatggggagataaggtgaagcgcaagttt
ttcgttacaaaggatggtatggcacaggttgctgattttgccaatcgaaaattaaggggg
taa
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