Cupriavidus pauculus: EHF44_19510
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Entry
EHF44_19510 CDS
T05738
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cpau
Cupriavidus pauculus
Pathway
cpau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EHF44_19510 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpau03400
]
EHF44_19510 (ligD)
Enzymes [BR:
cpau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EHF44_19510 (ligD)
DNA repair and recombination proteins [BR:
cpau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EHF44_19510 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AZG15661
UniProt:
A0A3G8H557
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All DBs
Position
2:306326..308950
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AA seq
874 aa
AA seq
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MAKTASATRPASRKPADAALGKYQDMRDFGATPEPSGKTARGRRAAANGAHAFVIQKHAA
RRLHYDFRLELDGTLKSWAVPKGPSFDPADKRMAVHVEDHPLDYADFEGVIPAGHYGAGT
VIVWDRGVWIPDEDPEAGYRAGKLKFELRGEKLQGHWTLVRMGGRKARDDNAWLLIKERD
AFARPASEFDVVEAMPDSVLAGTARPGKKKAGAAKADAKAKPARGKRTAAIELPEKANPA
ALPLALTPQLATLVEAPPADPTAWQYEIKFDGYRIVARIDGDDVRLFTRNGHDWTSKLRP
LAAEIAGLGWPDGWLDGEIVVVDAQGITDFQALQNAFETAHAEAIQFYAFDLPYYAGHDL
RAVPLAERRALLYRLLADHKSGRVRFSDNFEGDPKDMLDAACRMKLEGIIGKRADAPYVS
TRAGTWIKLKCQNRQEFVIGGYTDPKGSRNGLGSLLLGLHDPDGKLRYVGNVGTGFDTAM
LDALRKQLDGLAADKTPFDPLPRGIKGHWVKPKLVAEVTFGAWTREGRIRHSVFHALRTD
KPASAVTLEKPAKPADKAPKAAAKAAAKTATGRKTSGKTAIGNVAVSHADRVIDKSTGLT
KGDLVTYYARAAALMLPHLKGRPLALVRAPAGIDGEQFFQRHGDTLKLKGVRALDPALWP
GHPPLLEITGADAIVEAAQLNVVEFHTWNALARNIGKPDQIVFDIDPGEGVTWREIQEAA
TLVKAMLDELGLQGFLKTSGGKGLHVVVPLAARAGWDEVRDFSQDVVNHMASTIPDRFVA
KSGPRNRVGKIFIDYLRNGVGATTAAAFSARARPGLGVSIPVSWDELDDLTGAAQWTIAN
VEDRLAELARHDPWAGHDKVRQTLTRARKLLGDG
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaccgcctccgccacccgccccgcctcccgcaagccggccgacgccgccctg
ggcaagtaccaggacatgcgcgacttcggcgccacgcccgagcccagcggcaagaccgcg
cgcgggcgccgcgcggcggccaacggcgcccacgcgttcgtcatccagaagcacgcggcc
cggcggctgcactacgacttccggctggaactcgacggcacgctcaagagctgggccgtg
cccaagggcccgagcttcgaccccgccgacaagcgcatggccgtgcatgtggaagaccac
ccgctcgactacgccgatttcgagggcgtgattccggccggccattacggcgcgggcacc
gtcatcgtctgggaccggggcgtctggattccggacgaagacccggaggccggctaccgc
gccggcaagctcaagttcgaactgcgcggcgaaaagctgcaggggcactggacgctggtg
cgcatgggcggccgcaaggcgcgcgacgacaacgcctggctgctgatcaaggagcgcgac
gcctttgcgcggccagcgtccgaattcgacgtggtcgaggccatgcccgacagcgtgctg
gccggcacggccaggccgggcaagaagaaagccggcgccgccaaggccgacgccaaggcc
aagcccgcgcgcggcaagcgcaccgccgccatcgaactgcccgaaaaggcgaatccggcc
gcgctgccgctggcgctgacgccgcaactggccacgctggtcgaagccccgccggccgac
cccaccgcgtggcagtacgagatcaagttcgatggctaccgcatcgtggcccgcatcgac
ggcgacgacgtgcggctgttcacgcgcaacgggcacgactggacgtcgaaactgcgcccg
ctggcggccgagattgccggcctgggctggcccgacggctggctcgacggcgagatcgtg
gtcgtggacgcccagggcatcaccgatttccaggcactgcagaacgccttcgagaccgcc
cacgccgaggccatccagttctacgcgttcgacctgccctactacgccggccacgacctg
cgcgccgtgccgctggccgagcgccgcgcgctgctgtaccggctgctggccgaccacaag
tccggccgggtgcgcttcagcgacaacttcgagggcgacccgaaagacatgctggacgcg
gcctgccgcatgaagctcgaaggcatcatcggcaagcgcgccgatgcgccgtacgtcagt
acgcgcgccggcacgtggatcaagctcaagtgccagaaccgccaggaattcgtgatcggc
ggctacaccgatcccaagggcagccgcaacgggctggggtcgctgctgctgggcctgcac
gatccggacggcaagctgcgctacgtgggcaacgtgggcaccggcttcgacacggccatg
ctggacgcgctgcgcaagcaactggacgggctggccgccgacaagaccccgttcgacccg
ctgccgcgcggcatcaagggccactgggtcaagcccaagctggtggccgaggtcacgttt
ggcgcctggacccgcgagggccgcatccgccactcggtcttccatgcgctgcgcacggac
aagccagcatccgccgtgacgctggaaaaaccggccaagcccgccgacaaggcgccgaag
gcggcggccaaggcagccgcaaagacggcaactggccgcaagacgtccggcaagaccgcc
atcggcaacgtggccgtcagccatgcggaccgcgtgatcgacaaatccaccgggctgacc
aagggcgacctggtcacctattacgcccgcgccgccgcgctgatgctgccgcacctgaag
ggccggccgctggcactggtacgggcgccggccggcatcgacggcgagcagttcttccag
cgccacggcgacacgctgaagctgaaaggcgtgcgggcgctggacccggcgctctggccc
ggccacccgccgctgctggaaatcaccggcgccgacgccatcgtcgaggccgcgcagctg
aacgtcgtggaattccacacctggaacgcgctggcgcgcaatatcggcaagccggaccag
atcgtgttcgacatcgaccccggcgagggcgtgacctggcgcgagatccaggaagccgcc
acgctggtcaaggccatgctcgacgaactgggcctgcagggctttctgaagaccagcggc
ggcaagggcctgcacgtggtggtgccgctggccgcgcgggccggctgggacgaggtgcgc
gacttctcgcaggacgtggtgaaccacatggccagcacgattccggaccgctttgtagca
aagagcggcccccgcaaccgcgttggcaagattttcatcgattacctgcgcaacggtgtc
ggcgctaccacggcggccgcattttcggcgcgcgcccggcccggcctgggcgtctcgatc
ccggtgagctgggacgagttggacgacctgaccggcgccgcccagtggaccatcgccaac
gtcgaagaccggctggccgaactggcccgccacgacccctgggccggccacgacaaggtt
cgccagacgctgacgcgcgcccgcaagctgctcggcgacggctga
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