Chaetura pelagica (chimney swift): 104389746
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Entry
104389746 CDS
T08631
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03015
mRNA surveillance pathway
cpea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104389746 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
104389746 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpea03019
]
104389746 (PABPC1L)
03041 Spliceosome [BR:
cpea03041
]
104389746 (PABPC1L)
Messenger RNA biogenesis [BR:
cpea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104389746 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
104389746 (PABPC1L)
Spliceosome [BR:
cpea03041
]
Complex C
Other components
Complex C specific factors
104389746 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_occluded
RRM_3
ATP-grasp_2
DUF6262
Motif
Other DBs
NCBI-GeneID:
104389746
NCBI-ProteinID:
XP_009997085
LinkDB
All DBs
Position
Unknown
AA seq
586 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGARAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEK
HEEAQKAVADMNGKEINGRLVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQPHPGYFLPPIPQPQTRAAF
YSPSPVVPIRPAARWTAQPSRPPPYPAATPILRAAAQPRRLLSNISTMRQASTQVPRVPS
QAQRVGEPAVHVQGQEPLTASMLAAAPPQEQKQMIGERLYPLIQALHPSLAGKITGMLLE
IDNSELLLLLESPDSLHAKIEEAVAVLQAHQATEAPHKSSSMPFLQ
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagtggccctggctatccgttagcctctctctacgtgggggacctccaccca
gacgtgactgaagccatgctctacgagaagttctcccctgctgggcccatcatgtccatc
cgcgtctgtcgggacgtggccacacgccgatcgctgggctatgcctacataaacttccag
cagcctgtggatgctgagcgggccctggacaccatgaactttgaagtgatcaaaggtcgt
cccatccgcatcatgtggtcccagcgggaccctgggctccggaaatcaggtgttggaaat
gtcttcatcaagaacctggatgactccattgataataaagccctgtatgacacattctct
gcctttggaaacatcctgtcgtgcaaggtggtttgtgatgagaacgggtcccgtggctat
ggctttgttcactttgagacccacgaggcagcgactcgggccatcgagaccatgaatggg
atgttgctcaatgacaggaaggtatttgttggccatttcaagtcccgcaaagagcgcgag
gccgagtttggggcgcgggcgatggagttcaccaacgtctacatcaaaaactttggggat
gacatggatgatgacagactgagggaaatattctccaagtttgggaagacactgagtgtc
aaagtcatgatggacagcactggccgctccaagggctttgggtttgtcaactttgagaag
cacgaagaagcccaaaaggcagtggccgacatgaacgggaaggagatcaacgggcggctg
gtctatgtgggccgagcccagaagcggctggagcgccagagtgagctgaagaggaaattc
gagcagatcaagcaggagcgagtgagcaggtaccagggtgtcaacctgtatgtgaagaac
ctggatgatgggatagatgatgagaggctgaggaaggagttctctccctatggcaccatc
accagtgccaaggtgatgacagagggtggccacagcaaagggtttgggtttgtatgtttt
tcctccccagaagaggctaccaaggccgtgacagaaatgaacgggcggatcgtcagcacc
aaacctctctatgtcgcgctcgctcagaggaaagaggagaggaaagcaatcctcaccaac
cagtacatgcagagactggccaccatgagggctctgcccggccctctcctgggctccttc
cagccccacccggggtacttcctaccccccatccctcagccacaaaccagagctgccttc
tacagccccagcccagttgtccccatccgtcctgccgcccgctggactgcacagccctcc
cggccacccccgtatcctgcagccacccccatcctgagggctgctgcccagccccgccgc
ctgctctccaacatcagcaccatgagacaagcctccacccaagtgccccgtgtgccctcc
caggcccagagagtgggagaacctgctgtgcacgtgcaagggcaggaaccactgacagca
tccatgcttgcagcagcccctcctcaggagcagaagcagatgataggtgagcggctctac
cctctgatccaggcgctgcatccctccctggccgggaagatcactgggatgctgctggag
atcgacaactcggagctgctgctgctcctggagtctcctgactccctacatgccaagata
gaggaggcagtggctgttctccaagcacaccaggccaccgaggcccctcacaagagcagc
tccatgccattcctgcagtga
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