Cucurbita pepo subsp. pepo (vegetable marrow): 111791496
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Entry
111791496 CDS
T05351
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
KO
K14962
COMPASS component SWD2
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111791496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111791496
03036 Chromosome and associated proteins [BR:
cpep03036
]
111791496
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111791496
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
111791496
COMPASS/SET1 complex (yeast)
111791496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
PQQ_3
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
111791496
NCBI-ProteinID:
XP_023528635
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All DBs
Position
LG03:3456100..3462092
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AA seq
366 aa
AA seq
DB search
MALTELDDGTVRSMAIGAVFSDFVGKINSLDFHRKDDLLVTASEDDSVRLYDIANARLLK
TTFHKKHGADRICFTHHPSSVICSSRYNLDTTGESLRYLSMYDNRCLRYFKGHKERVVSL
CMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVAMEGGAIKL
FDSRSYDKGPFDTFLVGGDMAEVFDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKQCGFSL
EPSPNTTIEATFTPDGQYVVSGSGDGTLHAWNINKRTEVASWNSHIGVASCLKWAPRRVM
FVAASTVLTFWIPNTSKSTGESVGEARHLDLAGSFLHNALSLSFTLGGIMQCNESKTNLI
QIYLFM
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atggcgctaaccgagctcgacgacggcacggtgcggagcatggcaatcggagctgttttc
tctgacttcgttgggaagataaattctcttgactttcatcgcaaggatgatttgctggtg
acggcgagtgaggatgattccgtgcggctgtatgatattgcgaatgccaggttactcaaa
accacatttcataaaaagcatggtgctgatcgtatatgctttacccaccacccaagttcc
gttatatgctcttcaagatacaatttagatactactggagagtcactgcgatacctatca
atgtatgataaccgatgtcttcgctacttcaaaggacataaagagagggttgtttcgctc
tgcatgtctccaatcaatgacagcttcatgtcaggttctctcgaccacagcgtcaggata
tgggatcttcgagtaaatgcttgccagggaatacttcgtttacgtggcagacctaccgtt
gcgtatgaccagcaaggccttgtgtttgctgtggcaatggaaggaggtgctattaagttg
ttcgattcacgttcctacgacaagggacccttcgataccttcttggttggtggagatatg
gctgaagtctttgacatcaaatttagtaatgatggcaaatctatgctcttgacaactaca
aataacaatatatatgttcttgatgcatatggaggagagaagcaatgtgggttcagcttg
gaaccatctcccaacacaaccatagaggctacctttaccccagatgggcagtacgtcgta
tcaggctctggagatggaaccttgcatgcctggaacattaacaagcgtactgaggttgca
agctggaacagtcacataggcgttgcctcgtgcttgaaatgggctcctcgcagggtcatg
ttcgttgccgcatccactgtactcacattctggatccccaacacctcgaagtctacaggc
gagtcggtgggagaagcaaggcatttggatttggcggggagttttctgcacaatgctctt
tccttatcctttacccttggcggcatcatgcaatgtaatgaatcaaaaaccaatcttatc
caaatctatttatttatgtag
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