Chitinophaga pinensis: Cpin_6404
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Entry
Cpin_6404 CDS
T00959
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cpi
Chitinophaga pinensis
Pathway
cpi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Cpin_6404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpi03400
]
Cpin_6404
Enzymes [BR:
cpi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Cpin_6404
DNA repair and recombination proteins [BR:
cpi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Cpin_6404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_ligase_OB_2
DNA_ligase_C
GH3
Motif
Other DBs
NCBI-ProteinID:
ACU63808
UniProt:
A0A979GAI9
LinkDB
All DBs
Position
8046645..8048585
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AA seq
646 aa
AA seq
DB search
MLATLVDHPVDTPGWLYEVKWDGYRAIALLNKGGIQLISRNNKSFDEKFYPVFHALEAWK
INAILDGEIVVLTPDGISRFADLQNWRSEADGELIYYVFDLLWLNGYDLTQLPLIQRREL
LESLFPAPDIIRLSTAFRDTSSAEFLSAAKSLGLEGIIAKKEDSIYHTGLRSRDWLKIKI
NKRHEVVIGGYTRNENSSKPFSSLLVGVFEKGKFQYTGKIGTGFTSAQQKEMLQAFKPLI
RKTSPFSTVPDINKPSRFRPNPPKATAVWLSPQLVCEVSYAEITADGVMRHPSFEGMRID
KTAKEVGKEEAMPVAKVVKEAAGAISQQMLTPVVGGDRKTLLNPSEATQVRKVSKHELKF
SNLNKVFWPEEKYTKRDMLNYYYQVAPYILPYLKDRPQSLNRFPNGIKGKSFYQKDVTGK
APDWIKTFPYHTNDGEDKNFMVPTDEASLLYMANLGAIEMNPWNSKISKPDYPDWCIIDL
DPTEKNTFEQVIRTAQVTKEILDSIKVPGYCKTSGSTGIHIYIPLNAKYTYEDCQLFGKW
IASQVHQQLPSFTSIERMTQNRKGKIYVDYLQNRPKATLAAPYSLRPKPGATVSMPLHWD
EVKKGLKMKDFNITNAIARISEMGDIFKPVLGKGIDMKKILRSIRP
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgctggccacattggttgatcatcctgtggatacacccggctggctgtatgaagtaaaa
tgggatggctatcgcgcaattgccctgctgaacaaaggcggcattcaactgatctcccgt
aacaacaaatcattcgacgagaaattctaccccgtcttccatgcactggaagcctggaag
attaacgccatccttgacggtgaaatagtcgtgctgaccccagatggtatctcccgcttc
gctgatcttcagaactggcggagtgaggccgacggtgaactgatctactatgtattcgat
cttttgtggctgaatgggtacgatcttacacaacttcccctcattcagcgacgggagcta
ctggaaagcctgtttcctgcgcctgatatcatccggctcagcaccgccttcagagatacc
tcctcagcagaatttctttccgcggccaagtcactcggactggaaggcatcattgccaaa
aaagaagacagtatttatcatacaggtctccgtagccgggattggttaaagattaaaatc
aataaacgacatgaagtcgtcattggcggttatacgcgtaatgaaaactcttccaaacca
tttagctctttgctcgtaggtgtatttgaaaagggcaagtttcagtatacgggaaagata
ggcaccggctttaccagcgcccaacaaaaggaaatgctgcaggcattcaaacccctgatc
agaaaaacatctcctttcagtactgtacctgatatcaacaaaccttcccgcttccgtccg
aacccgccaaaggcaacagccgtctggctaagtcctcaactggtatgtgaagtgagttat
gccgaaatcacggctgatggtgtcatgcgtcacccctctttcgaaggtatgcgtatagac
aagacggcaaaagaagtgggaaaagaagaagccatgcctgtcgccaaggttgtaaaagaa
gcggctggcgctatctcgcaacaaatgctgacacctgttgttggtggtgaccgcaaaaca
ctattgaacccctctgaagccactcaggtacgaaaagtcagcaaacatgaactgaaattc
tccaatcttaataaagtcttctggccggaagaaaagtataccaaacgggatatgctgaat
tactactatcaggtagcgccttacatattgccttacctgaaagaccggccacaatcgctt
aacagatttccaaacggtattaaaggcaaaagcttctatcagaaagatgtaacgggtaaa
gcgcctgactggatcaaaaccttcccctatcataccaatgatggagaagacaaaaacttt
atggtacccactgatgaagccagtctgctctacatggccaatctgggtgctatcgaaatg
aatccctggaacagtaagatcagtaaacctgattatcctgattggtgtattattgatctg
gatccaacagaaaagaatacctttgagcaggtaatcagaaccgcacaggttacaaaagag
atattagacagcattaaagttccaggctattgcaaaacatccggctctaccggcatacat
atctacattcctttaaacgcaaaatatacatacgaagattgtcagttgttcggcaaatgg
attgcctcccaggtacatcagcaacttccttcttttacaagtattgaacgcatgacgcag
aacagaaagggcaaaatatatgttgattatctacagaacaggccaaaggctacgcttgca
gccccttactccctgcgcccaaaaccaggtgcaacggtctccatgccgctacattgggac
gaagtaaagaagggacttaaaatgaaagacttcaatattaccaacgccatcgcccgtatc
agcgaaatgggggacatctttaaaccggtacttggcaaagggattgatatgaaaaaaata
ctacggtctatacggccgtaa
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