Crocodylus porosus (Australian saltwater crocodile): 109323405
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Entry
109323405 CDS
T07440
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpoo04131
]
109323405 (VPS13A)
Membrane trafficking [BR:
cpoo04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
109323405 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_mid_rpt
VPS13_ext_chorein
VPS13_DH-like
VPS13_VAB
Chorein_N
VPS13_C
ATG2-VPS13_C
DUF5764
Motif
Other DBs
NCBI-GeneID:
109323405
NCBI-ProteinID:
XP_019410461
Ensembl:
ENSCPRG00005006496
UniProt:
A0A7M4EHL5
LinkDB
All DBs
Position
Unknown
AA seq
3201 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HIGQLNLQIPWQNLYTQPVEAVLDGVYLLVVPTASIKYDAEKEARQLLEARQRELQRIEE
AKQKIADQDKAKEEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDITNRENPLSFGVSLQ
NLSLQTADQNWNPCLHDETAKLFYKIVRLDNFFAYWNVKSQMFYHGGYDESLNNLKHGVA
CQNMIPDGYEFVFRPISAKAKLRMNPRSDFDFSSPKMDLDVNLQDIAIEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPLHNNAKAWWKYIIYGVLEVNVQPKLNMWSWEHIQHHRK
QVRNYREMYKMKITSKKPNEETLKFLEEFEKTLDIFNITLARQQAEVEATKAGLKIYRPG
VKQDEDSSGGWFGWIWGWSGEKEDEKKQQAKGASLEELMTSEEKAKLYAAIGYSETAVDP
TLPKSYEAMRLSVKLISMSISIRENQEKPELIKFALIDLSTMFTQRPGAQAIRFETKISS
FEVMGMSREKFIPCLLSSRTVCSENDTSLLSIMFETNPLDEKADQKIRIEAQPLEIIYDA
RTVNSLVDFFRPPKDVHLEQLTSATLMKLEEFREKTSTGLLYVIETQKVLDLNINLMASY
IIVPQNGFYESTSNLLLLDLGNLKMTSKSRSDLSDLKIGQNTIEDIMSRAYDVFDIQLSS
IQLLYSKHHEKWQEARKVKYSSQHILQPVDLKVEFSRAMVVSDARMPKFKISGQLKLLSV
QISDKKLTGILELIDSIPKPESAPATASPPKISQIQVSPVLSPQVSQNVLPVLDLHSLPE
SESEEEFYDAPSSPVEDMPFFEASSGSLTRANSTRKKRLHKHDSLKNMTDLQLTFEIPEV
LIQLCRLDDDDTEKPVLQLKVLGLGTELKLRTFDMSAHAFLKEVCLLCPEYMDDDDKPVY
IVTTLDNTQDDLLTLEYTKADINGPELKTTYKNVLQLLKVNFSSLDVHLHTEALLNAMNY
LNNLLPKQETKVTEELAQEKEEEKKDVLKKLKSKKSKYEDVVDLHICADLSCLRVFIREQ
KHRISEIHIEGLDSQVVMRKAATEVIAKLKNISIMDSDEKALYKKALYITGKEVFSFKMV
SYMDATDDGAYVDMNVFDSQVYLTVGCIQVVFVNKLVSSILAFINNFQAAKEAVTEATVQ
AAEKAATGVKELAQRCSRMALDVNIKAPVVIVPQSAVSTNVLVADFGRITIKNKFFIAKT
KARCALPPVVDSMTVNLSELKLYRSSVERGSLQTEIQLLQPVNLEIVVERNLAAAWYTEI
PDIAVSGRLKPMNLILSQEDIATILRTLNENLWDNSGTPPPLPESKDTNSNYSDAHSTSQ
NSAGATLVTSAVVELHSPVKAKTTLKLDFQFDCLTLVLYSPNSKQVAVLNQRDDHLKLAE
FKLVLISAAVKMLSDGSMNALVKLANCTLDDKRLTVQKATPRMVEMKHGSEKKDMVDINY
KQGRDGTVLTTIVQEIYLCASMEFLLTVADVFLKANEESAAAQKTLKQSLAVKESVAVKE
QASVQPVSTMEINVVVKNPEIVFVADLTRSEAPSLVVTTQCEIFIKNSPQLYKMTAAVKE
MQMKACPFLPEKRKGNITTVLQPCDLFFEMLQSGTNPQMIEVSIKSLTVKVSPIIINTVM
SIMSAFSPTAETAQEDISPVPPDLWDKKDVKNLKMWFLEESSENENTDTVAELVPTGQTL
NMEIASVIITLEAGVGHRTVPMLLAKSSFSGEVKNWSTLINLHSQLELEVHYFNEMFGVW
EPLLEPLEIEKSDDFKPWTLGIKMKKKAKKALVESDAEEEQYKVPEYKTVINISSKDQLN
ITLSKCGLLMLNNLGTAFAEAATQTSDIFKKDRAPFVVMNSVGLPITVLPSDAFSVINDK
SGGKSFQLKDGESLNMDYLRTKSESDQFTAMTTLSSKRFYIQLNPHGHSTDDKIPLTKVG
RFLYRVRHEGSGVERFIVCQIDTIEGSKMITIRSPVQIRNHFSVPLSIFEEGRCLGTASP
KNEFSIPLTSYRSVLSFQPVTDENGVGGEYEMCEGISFDEIMKNVDSLLQRKCQPVKSAS
HSFIINIVPAKDTLSSSECGDVQWDFPYVVHLWPSVLLRNLLPYQMTYSLEGDGNTCIIL
EDGCSAQIHNAVLDQTKLKLQLHNYLDQNWRSEYQIRTAQQEISFITFSSVTELDKTELD
IAVHVTYTVGQMVIAVHCPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFFQ
NNKVQLMVTDSDLSDQFSLDTVGSHGSVKCKSHKREFQVGITIDNSSFNITRIVTFTPFF
MVTNRSKYTLEVAEDGKEKWIPITLQQCIPFWPENDTNKLLVRVENSDIPPKKIHFNKQE
NSTLMHLDNELGGLIVDVNMTEHSTVITFSDYHDGAAPFLLINHTKNEIIEYGQSSLSMM
EDSLQPNKAVLYTWAEPVGSRILKWKCGREEGEVSQKEDKMTPLTLDDKREIYLVSFFEG
LQRIILFTEDQNVFKLAYESVKAELAEQEIVISLQDVGISLVNNYTKQEVSYIGITSSDI
VWETKPKKKSRWKPMSIKQTEKLEQEFKEYSEQSPSENKIVELESNVSVCLTPNGSNMKI
RQPNEIPIRRNYLPALKVEYSTSAHQKSFRIQVYRIQIQNQIPGAIFPFVFYPIKPPKSV
TLDSAPKPFTDISIVMRTAGHSQISHIKYFKVLIQEMDLRLDLGFLFALLDLFTQADMPK
DEEVTLFKKDVESLHEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSTGGEDGNKLER
QTELIPVQSLNLLLKSIGATLTDVQDIVFKLAFFELSYHFCTTTQLQSAVIRHYSKQAIK
QMYVLILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLKALVGGAV
GGLAGAASRITSAMAKGVAAITMDEDYQHKRREAMNKQPTGLKEGITRGGKGLVSGFVSG
ITGIVTKPIRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRVTDSSDDV
ASLRPPRFFGEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNATDLLMVTKSG
VLFVTKGTFGQLTCEWQYTYDEFTKEPFIVDERRLRIEAKERVKSVFHAKEFGKIINFRT
PEDAKWILSKLEEVRENHPRL
NT seq
9606 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgagtcgctggtcgtggacgtgctgaatcggttcctgggcgactacgtggtg
aacctggacagctcccagctcaagctgggcatctggggaggagccgtagcacttaagaat
cttgaaataaaggaaaatgcactaagtcagttggatgtaccatttaaagtgaaagcgggt
catattggtcaacttaacttacagatcccatggcaaaatctttatactcaacccgtcgaa
gctgttttggatggagtttacttgcttgtagtgcccacagccagtataaaatatgatgct
gagaaagaagccagacagctcctggaagccaggcaaagagaattacaaagaatagaggaa
gcaaaacagaaaatagctgatcaagataaagcaaaagaagaaaagcaagacacttttgta
gaaaagttagtcactcaggtcatcaaaaatcttcaagtgaaaatttccaacattcatgtg
cgatatgaagatgatattacaaatcgagagaacccattgtcatttggtgtttcacttcag
aatctcagtttgcaaacagcagatcaaaattggaatccatgtttacatgatgaaactgcc
aagctgttctataagattgtacgacttgataacttttttgcttactggaatgtaaagtct
cagatgttctaccatggtggttatgatgaatctttgaataatttaaagcatggagttgcc
tgccaaaatatgattccagatggttatgagtttgtatttcgtccaatttcagctaaagcc
aaactccgtatgaatcctcgatctgattttgacttttcttcaccaaaaatggacttggat
gtaaatttacaggatatagccattgaattcaataaaccacagtacttcagtgttatggag
ctccttgagtccattgatatgatgacccgaaacctaccatacaggaaatacaggcctgat
gttcctttgcacaacaatgccaaggcatggtggaaatacattatttacggtgtccttgaa
gtaaatgttcaacctaagcttaatatgtggtcatgggaacacattcagcatcacagaaaa
caagtgaggaattacagagagatgtataaaatgaagataacatcaaagaaacccaatgaa
gagactttaaaatttttggaagaatttgaaaagacattggacatctttaatatcacatta
gccagacagcaggcagaagttgaggcaaccaaagctggattaaagatttacagaccaggg
gtgaaacaagatgaagatagttctggtggctggtttggatggatatggggctggtcaggg
gaaaaagaagatgaaaagaagcaacaggcaaagggtgcaagtcttgaagaattgatgaca
tctgaagaaaaggctaaactctatgcagcaattggatatagtgaaacagctgttgatcct
acactgcccaagtcgtatgaagccatgaggctctctgtaaagctgataagcatgtccata
tcaataagggaaaaccaggagaaacctgagttaataaaatttgcattaattgacctgagt
acaatgttcacacaacgaccaggtgcacaggcaataagatttgaaacaaaaataagctca
ttcgaagttatgggcatgtctcgagaaaaatttataccctgtctactatcttctcgaaca
gtctgttcagaaaacgatacatcactcttgagtataatgtttgagaccaatcccttggat
gagaaagctgatcaaaaaatcagaatagaagcacagccattggaaataatatatgatgcc
aggactgtgaatagtttagtggatttttttagacctccaaaagatgtacatttagagcaa
ctgacctctgcaactttgatgaagcttgaagaatttcgtgagaagacatcaacaggattg
ttatatgttattgaaacacagaaagttcttgatttaaacattaacttaatggcatcatat
atcatcgttccccaaaatggtttttatgaatctacatcaaatttactacttctggatctt
ggtaatcttaagatgacaagtaaaagtcgttctgacctatcagatctcaaaataggccaa
aacactattgaagacataatgtcaagagcctatgatgtatttgatattcagctaagcagt
atacagctactttatagcaaacatcatgaaaagtggcaggaggctcgtaaggtaaaatat
tcgtctcaacatatcttgcagccagtggatttgaaagtggaatttagcagagctatggtt
gtctctgatgcaagaatgcccaaattcaaaatttctggacaactgaaattactttctgtc
caaatatcagacaagaaactgactggtatcttggagctaattgacagcattcctaaacca
gaaagtgctcctgccacagcttctcctccaaaaatatcccagattcaggtgtcgccagtg
ctttcaccacaggtgtcacaaaatgtccttcctgttttggatcttcactcattacctgaa
tcagaatccgaagaagaattttatgatgctccaagtagtcctgtagaggacatgccattt
tttgaagcatcatctggctccctcacaagagcgaacagcacgagaaaaaaaaggttacat
aagcacgactcactgaagaatatgacagaccttcaattgacatttgaaatacctgaggtc
ttaattcagttgtgtcgtcttgatgatgatgatactgaaaagcccgtgttgcagctaaaa
gttttaggattaggcactgaacttaaactaagaacatttgatatgtctgcacatgctttt
cttaaagaagtctgtctgttatgtccagagtacatggatgacgatgacaaacctgtttat
atcgttacaactttggataacacgcaagatgatcttcttacactggagtacacaaaggct
gatattaatggaccagagctgaaaactacttataagaatgttctacagttgttaaaggtg
aatttctcttccttggatgttcatttgcatactgaagcacttctgaatgctatgaattac
ctaaataatcttttaccaaagcaagagactaaagtaacagaagaactagctcaagaaaaa
gaggaggagaaaaaagatgtccttaagaaattaaagtcaaaaaaatccaaatatgaggat
gttgtggatctccatatctgtgcagatttatcctgtttgcgggtttttattagagaacaa
aaacacaggatatctgaaattcacattgaaggtctggacagccaagtggtcatgagaaaa
gcagctactgaagtgattgcaaaattaaagaacataagtattatggattctgatgagaag
gcattgtataaaaaggctctttatatcacaggaaaagaagtcttcagttttaaaatggtg
tcttatatggatgctacagatgatggtgcctatgtagatatgaacgtttttgacagccag
gtttacttaactgtgggctgcattcaagttgtttttgtcaacaagcttgtttcgtctata
ttggcttttataaacaactttcaagctgctaaggaagctgttactgaagcaactgttcaa
gcagcagagaaggcagctacaggtgtgaaagaattggcacaaaggtgttcccgaatggca
ttggatgtcaatattaaagcacctgtagtcatagtgccacagtcagctgtgtcaactaat
gttttggttgctgattttggtcgtatcaccataaagaacaagttcttcattgctaaaaca
aaagcacgatgtgcccttccacctgttgttgactcaatgacagtgaatttgagtgaacta
aagctatacaggtcatcagttgagagaggttcactgcaaactgaaatacagctattgcag
cctgtaaatcttgaaattgttgttgaacgaaatttagctgctgcttggtatactgagatt
cctgatatagcagtatctggacggctcaagcctatgaatctaattctcagtcaagaagac
atagccactatattaaggacactgaatgaaaatttatgggacaattctggtacaccaccc
cctttgccagaatcaaaagatacaaatagcaactacagtgatgcacacagtacttctcag
aactctgcaggagcaactctggtgacatctgctgtagtggaattgcattcacctgttaaa
gctaaaacaactctaaaacttgacttccaattcgattgtctgactttggtactgtatagt
ccaaactctaaacaggttgcagttttgaatcaaagagatgatcatttaaaactcgcagag
tttaaattggtcttgatttcagctgctgtcaaaatgctatctgatggttcaatgaatgct
ttagtcaaattagcaaactgtacattagatgataaacgtctgacagtccagaaggcaact
ccaagaatggtagaaatgaaacatggatctgaaaagaaagacatggtggatataaactac
aagcaggggagagatggcactgttctcactaccattgttcaagagatatacctctgtgca
agcatggaatttctacttactgttgcagatgtattcctaaaggctaatgaagaaagtgct
gcagcccagaaaactttaaaacaatctttagctgtaaaggaatctgtagctgtaaaggaa
caagcatctgtgcaaccagtatcgacaatggaaattaatgttgttgttaaaaatccagag
attgtgtttgtggctgatttaacaagaagtgaggctccttcattagtagttacaacacaa
tgtgaaatcttcattaaaaattcccctcagttatataaaatgacagctgctgttaaagag
atgcaaatgaaagcatgcccctttcttccagaaaaaagaaaagggaatattaccacggta
ttgcaaccttgtgatctcttctttgaaatgctgcagtcaggtactaatccacaaatgatc
gaagtgtcaattaaatccctaacagtaaaggtttcaccaattatcataaatacagtgatg
agtattatgtcagccttttctccaacggcagagactgcacaggaagatattagtccagtt
cctccagacttgtgggataagaaagatgtaaaaaatctaaaaatgtggtttcttgaagag
tcaagtgaaaatgaaaatacagatacagtagcagagttggttcctacaggacagacctta
aacatggaaattgcatcagtcatcataactcttgaagctggggtgggtcacagaacagta
cctatgcttctggcaaaatcatcattttctggtgaggtcaaaaactggagtaccctcatc
aaccttcattcccagcttgaactagaggtacattactttaatgagatgtttggtgtgtgg
gaacctttgcttgaaccgctagaaattgaaaaaagtgatgatttcaaaccatggactctt
ggaatcaagatgaaaaagaaggctaaaaaagcactagttgagtcagatgcagaggaagag
cagtacaaggtgccagaatataaaacagtaataaacatctcctcaaaagaccagctgaac
attacactatccaaatgtggactactgatgttgaataacttgggcacggcatttgctgaa
gcagctacccaaacttcagatatcttcaagaaagatcgagcaccatttgtagtaatgaat
tctgtaggacttcccatcactgtgttgcccagtgatgcctttagtgtgataaatgataaa
tctggaggaaaatcttttcagttaaaagatggagaaagtctaaatatggactatctcaga
accaaaagtgagagtgaccagttcacagcaatgactaccctaagcagcaaaaggttttac
attcaacttaatcctcatggtcactccacagacgataagattccattgacaaaagtgggc
cgatttctttacagagtaagacatgaaggatctggtgttgaaaggttcattgtttgtcag
attgatactattgaagggagtaaaatgataactatacgttcacctgtgcagataaggaat
catttttctgttccactgagtatttttgaagaaggaagatgtctaggaactgcttcacct
aaaaatgaattcagcataccattgacctcttataggtccgtacttagtttccaacctgta
actgatgaaaatggagtgggaggagaatatgaaatgtgtgaaggaattagctttgatgaa
attatgaaaaatgttgacagcctgttacagaggaaatgccagcctgtgaagtctgctagc
cattcatttatcattaatattgtgccagcaaaagataccttgtcatcttcagaatgtggg
gatgttcaatgggatttcccgtatgttgttcatttatggccttctgttcttcttcgcaat
cttctcccttatcaaatgacttattctctagagggagatggcaacacatgtatcatccta
gaagatggttgctcagctcagattcataatgcagtattggatcagaccaagctgaaattg
caattacataattatcttgatcaaaactggagaagcgagtaccagataagaactgcccag
caagaaattagctttatcaccttctcttctgtcactgaactggataagacagaattggat
atcgctgtccatgtcacctacacagttggacagatggttatagcagttcactgtccatat
tggatggtaaataaaactggccgaatgttgcaatacaaagctgatggtattcatcgcaag
catcctccagactacaaaaagccacttcttttttctttccaacctaaaaacttcttccaa
aacaacaaggttcagcttatggtgactgacagtgacctgtctgatcagttttcacttgat
actgttggcagtcatggttctgttaaatgtaaaagtcataaaagagagtttcaagttggt
atcactatagataatagtagctttaacattaccagaattgtgacattcactccctttttc
atggtcacaaacagaagcaagtatactttagaagtagctgaagatggcaaggaaaaatgg
attcctatcactttgcaacagtgtattcctttttggcctgagaatgatacaaataagctg
cttgttagagttgaaaactctgacattccaccaaagaagatacattttaataagcaagag
aacagtacattgatgcatttagacaatgagcttggaggcctcatagtggatgtaaacatg
actgaacattctacagtgattactttctcggattaccatgatggtgcagctcccttcctg
ttgattaaccataccaaaaatgaaattattgaatatggccagagttctctcagtatgatg
gaagacagtcttcagccaaataaagcggtgttgtacacatgggctgagccagtaggctct
aggatattgaaatggaaatgtggaagggaggaaggagaagtatctcagaaggaagacaag
atgacacctcttactctggatgataaaagggaaatttatttagtctcattttttgaaggc
ttacaacgtattatcctattcactgaagatcagaatgtgttcaaactagcatatgaaagt
gtaaaagcagaactggcagaacaggaaattgttatatcattgcaagatgttggaatttct
ttggtcaataattatacaaagcaagaagtgtcttacattggaattacaagttctgatata
gtttgggagacaaaacctaagaagaaatctagatggaaaccgatgagcatcaagcaaacg
gaaaagttagagcaagaatttaaagaatactctgagcaatccccttcagaaaataagatt
gttgaactggaatcaaatgtttcggtttgtttaacacctaatggcagtaacatgaaaatc
cgacagccaaatgaaattcccataagaagaaattatctccccgctttaaaggtagaatat
agtacatctgcacatcagaaatccttcagaatccaggtttacagaatacagatacaaaac
cagattcctggagccatatttccctttgtgttttatcctattaaacctccaaagtccgtc
accctggattcagcaccaaagccatttactgacatcagtattgtcatgaggactgcaggc
cattctcagatatcacatattaagtactttaaggtactgattcaagaaatggatctcaga
ttagaccttgggttcctatttgcattgcttgatctctttacacaggcggatatgcccaaa
gatgaagaggttacacttttcaaaaaggatgtagaatctctccacgaagaattgatgagt
gtgtcatcaatggatacatcacaaatcagcttgtatgaatactttcatatctctccaatc
aagttacatttaagtttttcactcagcactggtggagaagatggcaacaaattagaaaga
caaactgaactaattccagttcagtctttgaatctcctgctgaagagtattggtgccaca
ctcacagatgtacaggatattgtctttaagttggctttctttgaactcagctatcacttc
tgtacaaccacacagctacaatcagccgtcataagacattattcaaaacaggctattaaa
caaatgtatgttcttatacttggccttgatgttttgggtaatccatttggcttcattaga
ggtttgtctgaaggagtagaagcattcttctacgaaccataccagggagccatccagggt
cctgaagaatttattgagggaatggcactaggacttaaagcactagtaggcggagctgtt
ggcggattagctggtgctgcatccaggattactagtgctatggctaaaggagtggcagca
ataaccatggatgaagactatcaacataaaagaagggaagccatgaataaacaacctact
ggcctcaaagaaggcatcactcgtggagggaaaggcttagtatctggctttgttagtggc
ataacaggaatagtgacaaaaccaataagaggagcccagaaagaaggagcagctggcttt
ttcaaaggtgttggaaaaggtttagtgggagcagtagcaaggcccactggaggaatcatt
gatatggctagcagcacatttcagggcattaaaagagttacagattcttctgatgatgtg
gcaagtctgcgtccacctcgtttctttggtgaggatggagttattaggccttacagatta
agggatgggaccggaagtcaaatgttacagaaaattgaaaatggaagatttgcaaagctc
agatatattgcacacgcaatggtgaatgctacagatttgttaatggtaacgaaaagtggt
gttttgtttgtgacgaaaggaacatttggacaactgacatgtgagtggcagtatacatat
gatgagtttaccaaagagccattcattgttgatgaaagaagattacgtattgaagccaag
gaacgggttaaatctgtatttcatgccaaagagtttggaaaaataattaattttagaaca
ccggaggatgccaagtggatcctttctaaattggaagaagtgagagagaatcatccaaga
ttgtaa
DBGET
integrated database retrieval system
