Crassaminicella profunda: K7H06_17150
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Entry
K7H06_17150 CDS
T07525
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cprf
Crassaminicella profunda
Pathway
cprf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cprf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K7H06_17150 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cprf03400
]
K7H06_17150 (mfd)
Enzymes [BR:
cprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K7H06_17150 (mfd)
DNA repair and recombination proteins [BR:
cprf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K7H06_17150 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QZY54739
LinkDB
All DBs
Position
complement(3705661..3709170)
Genome browser
AA seq
1169 aa
AA seq
DB search
MILQENLFVQGIENLKGYEELKYSLNKGLSPTLVHGLIDSQVAHIVFSMNRSFHKQCLII
THSEYQAKKIYEDLKFFIKNKAHTYPTKELVFYNYDAQSHQRLEERLNTMIEMVRGEKCI
VVASIESLLHKLMPKAQFCKNFFKIEYGEVVELEKIIAIFILLGYERVDMVEVKGQFSVR
GGIIDFFPVTSKNPYRIELFDDEIDSIRSFDIYSQLSLEKLKEVLVTPAQEVLLDDDQKK
EAIKKIKVDFKEHEKKIREESNGLSEKISAFIEALQIQNRPQGFEKYLNYYYKNLELLTD
YFEKDALIFIDEPSRVKERAYTAYKELEESFKGLLEKEEVLPAQVGLITNYEDFLYELNK
KHVFVLSSLPKNNTYFKPKHIVSFSARMAQSFHGKIELFSNELKNYKYRGYKILLLCGTD
ERGKRLEENLKEQGIEAIFIKDINHPIQSGQIFILQGNLHKGFEYIKSKFLVITEDEIFG
TAKRKRTTQKRKDARPIKSFVDLNIGDYIVHENHGVGKYIGVEQLKVEGAKKDYLKVKYS
GEDILYVPIEQMDMIQKYIGSDTARVKLNKLGTAEWKKTKAKAKGAIVDMAKDLLKLSAI
RKERSGYAFSADTPWQNQFEDSFVYEETPDQIRCIKELKEDMEKSIPMDRLLCGDVGYGK
TEVAVRGAFKCVMDGKQVAFLVPTTILAQQHYNTFINRFGQFPITIEMLSRFKTEKQQEE
IIKKVKAGAVDILIGTHRLISKDVAFKDLGILIIDEEQRFGVQHKEALKHLRENVDVLTL
TATPIPRTLHMSLIGLRDMSVIEDPPEERYPVQTYVIEYNEEMIRDALLREMGRGGQVYF
VFNRVRGIQQMAAKIRELIPDARVAVGHGQMSERQLENIMLDFMNGEYDILVCTTIIETG
LDISNVNTIIIYDADKMGLSQLYQLRGRVGRSNRLAYAYLTYQKDKILTEVAEKRLTAIK
EFTEFGSGFKIAMRDLEIRGAGNLLGSQQHGHMAAIGYDLYCKLLEDTVREMKGEEIQEI
PETSIEINVNAFIPEKYITNESHKLEIYKKIASIRDKQDTYELEEEIEDRFGNIPETVMN
LISIAYIKAMAQKMGMVHISETETHAKFVFDEAGRMNPLVISEMIGFYGNRIDINVGNNP
HIRLKYYFYNKRLKEIRGFLEKISGFNKI
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgattttgcaggagaatttatttgtccaaggtattgagaacttaaaaggatatgaagag
ttaaaatatagtttaaataaaggtttaagtcctaccctggtacatggactcattgactct
caagttgctcatattgtatttagtatgaatcgttcttttcataaacagtgcctgattatt
actcatagtgagtatcaagcaaaaaaaatttatgaagacttaaagttttttattaaaaac
aaagcccatacatatcctactaaggaattggtgttttataattatgatgcccaaagtcat
cagagacttgaggaaagattaaatacaatgattgaaatggtcaggggagaaaaatgtatt
gttgtagcatctattgaaagtttgcttcataaattaatgccgaaggcccagttttgcaaa
aacttttttaaaatagaatatggtgaagttgtagaactggaaaaaataatagctattttt
attttattaggatatgaacgagtagatatggttgaagtaaagggacagtttagcgttaga
gggggaattatagatttttttcctgtcacttctaaaaatccttatcgaatagagcttttt
gatgatgaaatagattctattcgaagctttgatatttactctcagctatctttggaaaaa
ttaaaggaagttcttgtaacacccgctcaagaagtattattagatgatgatcaaaagaaa
gaagccatcaaaaaaataaaggttgattttaaggaacatgagaagaaaataagagaagag
tctaatggattaagtgaaaagatcagtgcttttattgaagctcttcagatacaaaataga
cctcaaggctttgaaaagtatttaaactattactataagaatttagaactattaactgat
tattttgaaaaagatgcccttatttttatagatgaaccatcccgtgtaaaagaaagggct
tatactgcgtataaagaacttgaagagagttttaaaggattattagaaaaagaagaagtc
ctgccagcacaagtaggcttgattacaaattatgaagattttttatatgaattaaataaa
aaacatgtgtttgtattaagtagtttacctaaaaataatacttactttaagccaaaacat
attgtaagtttttctgctaggatggcacaatcctttcatgggaaaatagagttattctca
aatgaattgaaaaattataaatatagaggctacaaaattcttttgctttgtgggacagat
gaaagagggaaaaggttagaagaaaatttgaaagaacaagggattgaagctatttttata
aaggatatcaatcatcctattcaatctggacaaatttttattcttcaagggaacctacac
aaaggatttgagtatattaagagtaaatttttggttatcacagaagatgagatttttggt
acggccaaaaggaagagaacaactcaaaaaagaaaagatgctcgacctattaaatctttt
gtagacttaaatataggagattatattgttcatgaaaatcatggagtaggaaaatatata
ggggttgagcagttaaaggttgagggagctaaaaaagattatctaaaagttaaatattca
ggggaagatatattgtatgtacctattgagcagatggatatgatacaaaaatatattggt
tctgatactgctagagtaaaattgaataaattaggtacagcagaatggaagaagacgaag
gcaaaagcaaaaggagccattgtagacatggcaaaggatcttttaaagctaagtgccatt
cgaaaggaacgtagtggttatgctttttcagcagataccccttggcagaatcagtttgag
gatagttttgtatatgaagaaactcctgatcaaattcgttgtataaaagagttgaaggaa
gatatggaaaaatctattccaatggatagacttctttgtggagatgttggatatggtaag
acagaggtagccgtaagaggggcttttaaatgtgtaatggatggaaaacaagtagctttt
ttagtacctacaacgattcttgcacagcagcattataatacatttatcaatagatttggt
cagtttcctattacgatagaaatgttaagtagatttaaaacggaaaaacagcaagaagaa
atcattaaaaaagtaaaggcaggagctgtagacattcttataggaacccatcgcttaata
tcaaaggatgtagcgtttaaggatttaggaatattaataattgatgaggaacaaagattt
ggagtacagcataaggaagcattaaaacatttgagagaaaatgtagatgtattaacatta
acagcaacgcctattcctaggacgcttcatatgtcacttattggacttagagatatgagc
gttattgaagatccaccggaagaaagatatccagtacagacttatgtgatagaatataat
gaagagatgattagagatgctctgttaagagaaatgggaagaggagggcaagtttacttt
gtcttcaatcgagtaagaggaattcagcagatggccgcaaaaataagggaacttattcct
gacgcaagagttgctgttggacatggacaaatgagtgaaagacagttagaaaatattatg
cttgattttatgaatggagaatatgatatattagtttgtacgactattatcgaaacagga
ttagatatatctaatgtaaatacaattatcatatatgacgcagataaaatgggactttcc
cagctttatcagttaagaggtagggtagggagatcaaatcgtttagcttatgcttatctt
acttatcaaaaggataagatccttactgaggttgcagaaaaaagattaacagctattaag
gaatttactgaatttggatcagggtttaaaatagctatgagggaccttgaaataagaggt
gcaggaaatcttttaggaagtcaacagcatggacatatggcggctataggatatgactta
tactgtaaactattagaagatactgtaagagagatgaagggagaagaaatacaagaaatt
cctgagacatctatagaaattaatgtaaatgcttttatacctgaaaaatatattactaat
gaaagtcataagttagaaatatataaaaaaattgcttctattagagacaaacaggatacc
tatgagttagaggaagaaatagaagacagatttgggaacataccagaaactgtgatgaat
ttaatttctattgcatatataaaagctatggcacaaaaaatgggtatggttcacatatct
gagacagagacccatgctaaatttgtttttgatgaagctggaagaatgaatcccttagtg
attagtgaaatgattggattttatggaaatagaatcgatataaatgtaggtaataatcca
catataagattaaaatactatttttataataagagactaaaagaaataagaggattctta
gaaaaaattagtggtttcaataaaatttaa
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