Colwellia psychrerythraea: CPS_2848
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Entry
CPS_2848 CDS
T00258
Symbol
sbcC
Name
(RefSeq) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
cps
Colwellia psychrerythraea
Brite
KEGG Orthology (KO) [BR:
cps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cps03400
]
CPS_2848 (sbcC)
DNA repair and recombination proteins [BR:
cps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CPS_2848 (sbcC)
Archaeal homologous recombinant proteins
CPS_2848 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
ABC_tran
AAA_21
nSTAND3
DUF3452
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAZ25382
UniProt:
Q480G6
LinkDB
All DBs
Position
complement(2975051..2978977)
Genome browser
AA seq
1308 aa
AA seq
DB search
MRILSLRFENINSLKGSWKIDFSEAPFDNNGLFAITGPTGAGKTTILDAICLALYHQTPR
LTVSKKQNQLMTRHTSHCMAEVEFEVRGQGYRAFWSQKRARNKLDGNLLEPVAELAKLDG
TIVSDKLKMVRSDISELTGLNFSRFTKSMMLSQGEFAAFLTSQPNDRAQLLEQLTGTEIY
GDISKQVFDNHRSASEALKLLQAQSQGVSLLDDEQVKALEQQLTEITEQEKTVNAQLQQA
QQVKAWCTNFSVNEQNQHAAKTQLLEIEKKELAAKQDLDLLTLSSLAEPIKAPYEKMVHY
REQYQQTLQQVTSQTEQLAILDQDIVVSDEALTLLKNRHVEAEAQRKVIEQVLHDKIQPL
DHNITHQQNALTETKNTIAEQSETLGVNANALTALEAEHQKAQETVQQQQAYLSQGQALA
KLPEKLPLWQNQYQQLSQLQANVVALVNEQDNTEKALLTLQTRQQEQQLQITQSEDELKQ
LNSRKQLMGEKTQQLIQHSQAAQAILSSRVTSTSTSTGNNDKGEGVVNELTGGMLNQAIL
DRQNQQLALKQAQQLAQRFHVLTQEQQGLSAQQSQDKQQLVITEQALVKLRQRYSATQQQ
KKDVETLLAQQQTIMALSEHRAKLQPEESCPLCGSTDHPAINEYRSLDSDEHQQRLSQLT
LERAQLEKQGKELNGVQANLTAQLEMQTNRLQGITSEQSNLAQNWQSLNINQYVLLSQNE
QSFSLQNVDVEQSINHQLTMVFGQLEELLLLQTSLQENSQNQQQNSEQISHCEKQLSTLF
NQLQLLEEQGKNQQGSKQKFTEELRLKQQAFLELNAQLLADIKTTEITLPLGGVNEKIKE
QDQEQNLEQEQARKLVICIDEKWLESLSKQGADYQQTVTTHQAAKTQLDSLVNDLGLLKQ
QVVHQQNQVTQIKSQLTQQENDLIQDYSLRVTHFVELGITGEDMQDSVLLRESINSQREL
SEAEFTVADQRHNEKKAAQQLNRGQLTTSKSLLDNLFPKNDNAKKDWLALLTDSKFTDEE
EFLLALLSAERKHDLTKLANDIDDSKKQAKILLSQSEKITLELNVQKDTLSEKGAVDFVE
SSVSESLVNLSDLLKQCQQNIGQFSQQIEQDNSNKIQQKTLLEQIKLAQDALDDLSHLNA
LIGSADGAKFRKFAQGLTLANLVHLANAQLERLFGRYQLQCQQNDTLELEVLDTWQGDTA
RDIKTLSGGESFLISLALALALSDLVSNKTSIDSLFLDEGFGTLDNNTLEVALDALDNLN
ASGKMIGVISHVDALKERIGVQIKVKKLSGLGVSSLDKQYEFHAETVS
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgagaatattaagtttacgctttgagaacatcaattcactcaaaggcagttggaaaata
gattttagtgaagctccttttgataacaatggtttatttgctattaccggtcctactggc
gcaggtaaaaccactatactcgatgccatttgtttagcgctttatcatcaaacaccgcgt
ttaactgtgtctaaaaaacagaatcagttaatgactcgccacaccagccattgtatggct
gaagttgagtttgaagtgagaggtcaaggttatagagctttttggagtcaaaaacgcgcc
cgtaataaacttgatggtaacttattagagcctgttgcagagttagctaaactcgatggc
accatagtgtctgataagcttaaaatggtgcgtagtgatattagtgagttaacagggctt
aacttctcacgttttaccaaatctatgatgctatctcagggagagtttgctgccttttta
acatcacaaccgaatgaccgtgcgcaattattagagcagcttaccggtactgaaatatat
ggcgacatatctaagcaagtttttgataatcatcgcagtgccagtgaagcgctaaaactt
ttacaagcgcaaagccaaggtgtttctttgcttgatgatgagcaagtaaaggcgcttgag
caacaattaacagaaattaccgaacaagagaaaacggtaaacgcgcaattacaacaagcg
caacaagttaaagcctggtgcactaatttttcggtcaatgaacaaaaccagcatgcagcg
aaaacacaactacttgaaatagaaaagaaagagttagccgcaaaacaagatcttgattta
ctgacgctgtcgtctttagctgagccgattaaagcaccgtacgaaaagatggtacattat
cgtgagcaataccagcaaaccttacaacaagtaactagtcaaacagaacaattggcgata
cttgaccaagatattgttgtgagtgatgaagcgttaacgctactaaaaaatcgtcatgtt
gaggctgaagcacaacgcaaagtaattgagcaagtattgcatgataaaattcaaccactt
gaccataacattacccaccaacaaaatgcattaaccgaaacaaaaaacaccatagccgaa
caaagcgaaacacttggtgtgaatgctaatgcgttgactgccttagaagcagagcatcaa
aaagcacaagagactgttcaacagcaacaagcgtatttatcgcaagggcaggcgttagca
aaattgccagaaaaattgcctttatggcaaaaccaatatcagcagttaagtcaactacaa
gctaatgttgtggcgttagttaacgagcaagacaataccgaaaaagcgttattaaccttg
caaactcgacaacaagagcaacaacttcagatcacgcaaagtgaagatgagttaaagcaa
ctgaatagccgtaaacagctgatgggtgaaaaaacacagcagctaattcagcatagccaa
gcagctcaggcgatcctatcaagtagggttactagtacttccactagtactggaaataat
gataaaggtgaaggtgtcgttaacgagttaaccggtggcatgctcaatcaagcgattcta
gaccgtcaaaatcagcaacttgctttaaaacaagcacaacagttggcgcagcgttttcat
gtccttacacaagagcaacaggggttatctgcgcagcagagtcaagacaagcaacagctg
gttatcactgagcaagcgctggtaaaacttcgtcaacgttatagcgctactcaacagcag
aaaaaagatgtagaaaccttacttgctcagcagcaaactattatggcgctgagtgaacat
agagcaaaacttcagcctgaagagtcttgcccattgtgtggttcaacagatcaccctgcg
attaatgaatatcgatcccttgacagtgacgaacatcaacagcgtttaagccaattaaca
cttgagcgagcgcaacttgaaaagcaaggtaaagagctaaatggcgttcaagcaaattta
actgcgcaacttgaaatgcagacaaatcgtttgcaaggcataacaagcgaacaaagcaat
ttagcgcaaaactggcaatcgctaaatattaatcagtacgttttattaagccaaaatgaa
cagtcattttcattacaaaatgttgatgttgaacagtcaattaatcatcagctaacgatg
gtgtttgggcagcttgaagagttacttttattgcaaacgtcactgcaagaaaatagccag
aaccagcaacaaaacagtgagcaaattagccattgtgaaaagcagttgtcgacgctattt
aatcagctacaactattggaagaacaaggtaagaatcaacaaggttcaaaacaaaagttt
actgaagaattacgcttgaaacaacaggcgtttttggagctgaatgctcagttgttagct
gacattaaaacgactgaaataacactgcctcttggtggcgtaaatgagaaaataaaggag
caagaccaggaacaaaatctggaacaagaacaagcgcggaagctagtcatttgtattgat
gaaaagtggcttgaatcattgagtaagcagggcgctgattatcagcaaaccgtgacgact
caccaagcggctaaaactcagcttgatagtcttgtaaatgacctcgggttgttaaagcag
caagttgttcatcaacaaaatcaagttacccagataaaaagccaattaacgcaacaagag
aacgatttaatacaagattattcgttacgcgttactcactttgttgaactgggtattaca
ggtgaagatatgcaagactctgttttattaagagaaagtattaatagtcaacgagagttg
agtgaagctgagtttactgtagctgatcaacgccataatgagaaaaaagcagctcaacag
cttaacagaggacagttaaccacctcgaaatctttattggataatctatttcctaaaaat
gacaatgcaaaaaaggactggttagcattacttactgacagtaagtttactgatgaggaa
gagttcttattagcgctacttagcgccgagagaaagcatgatttaactaagctcgcaaac
gacattgacgatagtaaaaaacaagcaaaaatcttgctgtcacaaagtgaaaaaataacc
cttgaattgaatgttcaaaaagatacgttgagtgaaaaaggggctgttgattttgttgaa
agttcagtatcagaatcattggtaaatttgtcagatttgttgaaacaatgtcagcaaaat
atcgggcagtttagccaacaaatagaacaagacaatagtaacaaaattcaacagaaaacc
ttgctagaacaaattaaattagcacaagatgctttggatgatcttagtcaccttaatgca
cttattggttcagctgatggtgctaaatttagaaagtttgcacaaggcttaacactcgct
aatttagtccatcttgccaacgcacaattagaacgtctctttggtcgctatcaacttcaa
tgccaacaaaatgataccttagaattagaggtactcgatacctggcaaggggatactgcg
cgtgatattaaaactttatctggcggtgaaagcttcttaataagtttagcgctcgcttta
gcactatctgatttagtcagtaataaaaccagtatcgactctctcttcctcgatgaaggt
tttggcaccttagataataacacccttgaagtagcacttgatgcgctcgataacttaaat
gctagtggcaaaatgattggtgtgatcagccatgttgatgccttaaaagaacgcattggc
gtgcagattaaagttaaaaaactcagtggcctgggagtcagcagtttggataaacagtat
gagtttcatgctgaaactgttagctaa
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