Coniophora puteana: CONPUDRAFT_83539
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Entry
CONPUDRAFT_83539 CDS
T03134
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cput
Coniophora puteana
Pathway
cput03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cput00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CONPUDRAFT_83539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cput03400
]
CONPUDRAFT_83539
Enzymes [BR:
cput01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CONPUDRAFT_83539
DNA repair and recombination proteins [BR:
cput03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CONPUDRAFT_83539
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
RNA_ligase
DNA_ligase_A_C
BRCT
DUF4073
Solute_trans_a
Motif
Other DBs
NCBI-GeneID:
19210610
NCBI-ProteinID:
XP_007770950
JGI:
Conpu1_83539
UniProt:
A0A5M3ML38
LinkDB
All DBs
Position
Unknown
AA seq
992 aa
AA seq
DB search
MQATPAPSPPRNENGQAATSYPAPPRNVDSAPFSILSRLFDKLSAERRPERRRKFLDVWF
NHWKEDIGYDLYPVLRLILPQRDRERAVYGLKEKNLAKTYIKLIPLNMKDPDAIRLLNWK
KPTDRDRSSGDFPTVLYEVVNKRSSVTEGSLTVEDLNNILDELSKNMGKQEVQSKILQRI
YNRATPEEQRWIVRIILKDMVISVKETTVFSVFHSDAQDLFNTCSDLKKVAWELWDSSRR
LNPEDKSVQLFRAFAPMLCKRPTDRIDETVKEMQGRKFIIEEKLDGERMQLHKRGNEYFY
CSRKGKDYTYLYGQHVGNGSLTPYIHSAFDERVDDIILDGEMLVWDPVSERNLPFGTLKT
AALDKTNKEHNPRPCFKIFDLLYLNGMSLHKKSLKFRKRNLRACLTEVPGRLEFTVEYEG
KTAKDIRQKMEEVMSARGEGLVIKHPDSEYTLNGRNRDWIKVKPEYMDNLGETVDVLVVA
ANYGTGKRSGGVSTLICAVLNDRQPDDDDEPKYSSFVRVGTGLSFTDYIWVRQKKWKPWT
AEDPPTFYQTSKRGQEDKGDMYIEPHDSFIVKIKAAEITASDQYHMGMTMRFPRILSIRD
DLGIEDCMTASEVLESMQVERKRKMEGNTGVSNKKRKTMTAKKASILPEYHGPDLKSVEL
ESDVFEDMRFMVSSDPKSRTGSEDREELMKIIHANGGQCVQVVGSQPTIVVYGGTTTPYD
LKLLINKGTVDIVKPEWIHDSVSRGQLAPMAKRYLFHATHERQLDPDFDQDEDVMEEDKP
NADDILQSHATPASAKKEESQVKDEVNKDNDSGDWLKVNADAEDEEGSVTESETDDDSVN
DDVISEGEDIDSTEAAPAGRTLDDTSREHVVMGENDDAMQYDDTHIFKHLCFYLDSPAIA
RKKGMTVKTKHEEEVARSFTILASQIEDNGGGIVELDDPKLTHVVLDKRDTSRRLTLNER
TSKPKRRRLVLADYISACLAEETLLDEEEFAP
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgcaggctaccccagcgccatcgccacctcggaatgagaatggccaggcagcaacgagc
tacccagctccaccccgaaatgtcgatagcgctcccttttcaatactgtcgcgtctgttc
gacaagctctcggctgagcgaagacctgaaagaaggaggaagtttcttgacgtctggttc
aaccactggaaagaagacatagggtatgacttgtatcccgttctgcgcctcattctgcca
cagagggatagggagcgtgcagtgtacggtttaaaagaaaagaacctcgcgaagacgtac
ataaaactgatacctttaaacatgaaggaccccgacgccatccgcctcctcaactggaag
aagcctaccgatagagataggagctccggagattttccaacagtactctacgaagtggtg
aacaagcgatcttctgttactgagggctcgctgacagtcgaggatctgaacaacattctg
gacgaactctcaaagaacatgggcaagcaggaggtacagtcaaagatcctgcagcgaatt
tacaaccgcgccacacctgaagagcagcggtggatagtccgtattatcctcaaggacatg
gtcatctctgtgaaggagacaacggtgttttctgttttccattcagatgcccaagatctc
ttcaatacttgttctgacctcaagaaggttgcttgggagctgtgggattcatctcgacgt
ctcaaccctgaggacaagtctgttcagctgttccgcgcatttgctccaatgctatgcaaa
agacccaccgacagaatcgacgaaaccgtgaaggaaatgcaaggacgtaagtttatcata
gaggaaaagctagacggcgagcgtatgcaacttcataaacgggggaatgaatacttctac
tgctccagaaaagggaaagattatacctatttgtatgggcaacatgttggcaatggcagc
ttgaccccgtacatacattctgcttttgatgagcgggttgacgatatcatcctcgacggc
gagatgctagtgtgggatcctgtttcggagcgtaacttgccgtttggtactctcaaaact
gccgctcttgacaaaacaaacaaggagcataaccctcgtccctgcttcaagatttttgac
cttctttatctcaacgggatgtctcttcacaaaaaatcactcaagtttaggaaacgtaac
ctccgagcttgcctcacagaggttcctgggcgactcgagttcacagtagagtatgagggg
aagaccgccaaagatatccggcaaaagatggaagaagtcatgtctgcgaggggcgagggc
ctggtaattaagcatccagactctgaatatactctcaatggcagaaacagagattggata
aaggtcaagccagagtatatggacaacttgggagagactgtggacgttctagtagtcgct
gcaaattatgggaccggaaagcggtccggaggtgtctctaccctcatctgtgctgttcta
aacgaccgccaaccagacgatgacgatgagccaaagtatagctcctttgttcgggtagga
actggcctgtcattcactgattacatttgggtgcggcaaaagaagtggaagccttggacg
gcagaagatccacccacattctatcagacttctaaacgggggcaagaggacaagggcgac
atgtacatcgaaccacatgactcattcatagtcaagattaaggcagctgagatcacggca
tccgatcaatatcatatgggtatgaccatgcgctttccccgtatactatctatacgggac
gatcttgggattgaagattgcatgacggcttcggaggttcttgagagtatgcaggtggaa
agaaagcgcaagatggaggggaatacgggggtgtcaaacaagaagagaaagacaatgaca
gctaagaaagcttccatattacccgagtaccatgggccggatcttaagtctgtcgaattg
gagtctgacgtattcgaagatatgagattcatggtctcctctgatccaaagtctaggact
ggtagtgaagatagggaagagttgatgaaaatcatacatgccaatggtggacagtgcgtt
caagttgtgggttctcagccgaccatcgtcgtttacggaggaacgacgacaccatacgac
ctcaaactcctcattaacaaaggcacagttgatatcgtcaagccggaatggatccatgac
tctgtctcccgcggacagttggcccccatggccaaaagatatctcttccatgccacccac
gagcgacaactcgacccagactttgaccaggacgaggatgttatggaagaagacaaacca
aatgccgatgatattttacagtcccatgccactccggccagcgcgaagaaagaggaaagc
caagtgaaggacgaagttaacaaagataatgattcaggagattggctcaaagttaacgct
gacgccgaagacgaggaaggctcggtcaccgagagtgagacagacgatgattctgtgaac
gacgacgtcatctccgagggagaggatatcgactcgacagaggctgctcctgccggaagg
actctggatgatacatcccgggaacacgtagtcatgggcgaaaatgacgacgccatgcaa
tacgacgatacgcatatttttaagcacctgtgtttctatttggattcaccagcaattgct
cggaagaaagggatgacggtcaagaccaagcacgaggaagaagtagcacgcagcttcacc
atcctagcatcccaaatcgaggataacggcggagggattgtcgagttggatgaccctaag
ttgacgcatgtagtcttggacaagagagacacatcccggcgattgactctcaacgaacgt
acatcaaaaccaaagcgaaggcgcttggttttggccgattacatatccgcttgccttgcg
gaggagacgctgctggatgaggaggagttcgcaccctag
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integrated database retrieval system
