Lachnoclostridium phytofermentans: Cphy_1729
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Entry
Cphy_1729 CDS
T00619
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cpy
Lachnoclostridium phytofermentans
Pathway
cpy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Cphy_1729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpy03400
]
Cphy_1729
Enzymes [BR:
cpy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Cphy_1729
DNA repair and recombination proteins [BR:
cpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Cphy_1729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABX42101
UniProt:
A9KS69
LinkDB
All DBs
Position
2128734..2131175
Genome browser
AA seq
813 aa
AA seq
DB search
MTTKLNEYNQKRNFERTLEPEGKTEDSEESLRFVIQHHMARKEHYDFRLEWNEVLLSWAV
PKGPSFDTHDKRLAVQVEDHPLEYRNFEGTIPKGEYGGGVVMLWDEGFWEPQGNVEEGLR
EGMLKFVLKGKRLKGKWALVRLKAKASEAKDNWLLLKEKDEYVKNTDGISEFITSIRTGR
TMKEIEEGEEEKIMRNPFHMVDAQLAKLVNTVPEGEDWLYELKYDGYRIIAFVEGNSVRL
ITRNGNDYMRRFHDVATSLIDLAAGRAMVLDGEMVVTDPSGKTDFQALQNYMKNPKGQNL
TYIVFDLLALNGADLRGQPLIHRKEMLEALMKDAPKNLYYSRYVRGNGKESFAVACASDM
EGIVGKKADSIYSGTRNGDWIKLKCDKRQEFVIGGYTLSDKKVWGISSLLLGVYEGEELV
FAGRAGTGLSESDMKTLEEKFENIKRMAPVFKTAPSPKSNEKITWLEPKLVAEIKFAEWT
KDNLLRQASFKGIRTDKDPMDIKREKPEEEIQSQSSEKEVEKPMGVNANSIIIEGIKISN
PDKVMFDDPVITKLDVVQYYEKVSELMLPYVSHRVLSIVRCPKGVSQTCFYKKHPGAGSK
GIITIPITTSSGETEDYFYIENISGLISEVQMGTLEFHTWGSRIDELEKPDVMVFDLDPD
EGMDLSQVRQGVLDVRSILNELCLNSYLKTSGGKGYHVVVPLKPVVNWNVFNDFARRVAE
VMEKKWPDRYTSNVRKAKRTDKIFIDWIRNGRGATSVAPYSVRARKGARVSMPIAWEELD
TVAPDGITMADALLRLNGKDPWKDFFQNNQMLK
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgactacaaaactaaatgagtacaaccaaaaaaggaactttgaaagaaccttagagccg
gaaggaaaaacagaagattctgaagaaagtctaagatttgtcatccagcaccatatggcc
cgtaaagagcactatgattttcgactggaatggaatgaagttcttttgagttgggcagta
cctaagggaccatcttttgatacacatgataagaggctcgccgtacaggtggaagaccat
cctctggaatataggaactttgagggaactattccaaaaggggagtacggcggtggagta
gtcatgctctgggatgaaggcttttgggaacctcaaggaaatgtcgaggaaggactccgt
gaaggcatgctgaaatttgttctgaaaggaaagcggcttaagggaaagtgggccttggtc
cggctgaaagcaaaggccagtgaagcaaaggataactggcttttactgaaagaaaaagat
gagtatgttaaaaatacggatgggatatccgaatttatcaccagtatcagaactggacgc
accatgaaggaaatcgaagaaggggaagaagaaaaaatcatgagaaaccccttccatatg
gtggatgctcagctcgccaaattagttaatacggtccctgagggtgaggactggctctat
gagttgaaatatgatggctatcgaattattgcgtttgtggaaggaaacagtgtacgtcta
atcaccagaaatggtaatgactatatgaggcggtttcatgatgttgccacttcgcttatt
gaccttgctgctggaagggcgatggtactggatggagaaatggtagttacagacccatcg
ggcaaaacagatttccaggctctgcaaaactatatgaagaatcccaagggccaaaatcta
acgtatattgtttttgatcttcttgcacttaatggtgcggatcttcgaggacaacctttg
attcatagaaaagaaatgcttgaagctttgatgaaggatgcccctaaaaacctctactat
agtcgatatgttagagggaacggaaaggaaagctttgcggtagcctgtgcgtcagatatg
gaaggaatcgtaggtaaaaaagccgattccatctacagcggaaccaggaatggtgactgg
attaaactcaaatgtgataaaagacaggaatttgtcattggaggatatacactttccgac
aaaaaggtatggggaataagttctcttctccttggcgtctatgaaggtgaggaattggtc
tttgccggacgtgccggtactgggctaagtgagtctgatatgaaaactcttgaggaaaaa
tttgagaacataaagaggatggccccggtttttaaaactgcacctagtcctaagtctaat
gaaaagattacatggcttgagccaaagctggttgcggaaatcaaatttgctgaatggacg
aaagacaatctattaagacaggcaagctttaaaggtatacgaacagataaggatcctatg
gatataaaaagggaaaagccggaggaggaaatacagtcccaatcctctgaaaaagaagtg
gagaaaccaatgggagtaaatgcaaacagtattattatcgaaggaattaaaatttccaat
ccggataaagtgatgtttgatgaccctgtaatcacaaagttagatgtggttcagtattat
gaaaaggtttcggagcttatgctgccgtatgtgagtcacagggttctcagcattgtacgc
tgtcccaaaggagtttcacagacatgcttttataagaagcatcccggtgcgggaagcaaa
gggattattacaattcccattactaccagcagtggggagacagaagattacttctatatt
gagaatatttcagggcttatctctgaagtgcagatgggtacactagaatttcatacctgg
ggaagccgtatcgatgagcttgaaaagcctgatgtgatggtatttgatttggatccggat
gaaggaatggatctaagccaggtccgccagggagtactggatgttagaagtattcttaac
gaactttgtttgaactcgtatctcaagaccagtggcggcaaaggatatcatgtagtagtc
cctttaaaaccggttgttaattggaatgtgtttaacgattttgcaaggcgggttgccgaa
gttatggagaagaagtggcctgacagatacacaagtaatgtcagaaaggctaagcgtaca
gataagatatttattgattggattcgaaatggtagaggcgctacaagtgtcgctccctat
tccgtaagggcgaggaaaggtgcaagggtttccatgcctattgcatgggaggaacttgac
acagttgctcccgacggcatcactatggcggatgcacttttgaggttaaacggcaaagac
ccttggaaagattttttccagaataatcagatgcttaaataa
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