Capsella rubella (pink shepherd's-purse): 17878167
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Entry
17878167 CDS
T02984
Name
(RefSeq) ABC transporter D family member 1 isoform X1
KO
K25819
ATP-binding cassette, subfamily D (ALD), peroxisomal ABC transporter [EC:
7.6.2.4
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb02010
ABC transporters
crb04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
17878167
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
17878167
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
crb02000
]
17878167
Enzymes [BR:
crb01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.4 ABC-type fatty-acyl-CoA transporter
17878167
Transporters [BR:
crb02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
Others
17878167
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_21
AAA_29
AAA_16
AAA_23
SMC_N
AAA_22
DEAD
nSTAND1
AAA_30
T2SSE
Motif
Other DBs
NCBI-GeneID:
17878167
NCBI-ProteinID:
XP_023633757
LinkDB
All DBs
Position
Unknown
AA seq
1338 aa
AA seq
DB search
MPSLQLLQLTERGRGLVASRRKSILLAAGIVAAGGAAVYVKSRVSSRRPDSSRHCNGQSD
DDEALEKLTGNDKKAKITTTKKKGGGLKSLQVLTAILLSQMGKMGARDLLALVATVVFRT
ALSNRLAKVQGFLFRAAFLRRAPLFLRLISENIMLCFMLSTMQSTSKYITGALSLRFRKI
LTKLIHSHYFENMVYYKISHVDGRITHPEQRIASDVPRFSSELSELIQDDLTAVTDGILY
AWRLCSYASPKYIFWILAYVLGAGTAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSE
SIAFYGGETREESHIQQKFKNLVSHMSHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF
FSGHLRPDDSTLGRAEMLSNIRYHTSVIISLFQALGTLSISSRRLNRLSGYADRIHELMA
VSRELGGDEKSSLQRNRSRNYLSEANYVEFSGVKVVTPTGNVLVEDLTLRVEQGSNLLIT
GPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPL
TSDQESKPLTESGMVELLKNVDLEYLLDRYQPDKEVNWGDELSLGEQQRLGMARLFYHKP
KFAILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHY
KRDDSALLTDGEIDSAKISDTDRQNDAMVVQRAFAAARKESAATNSKGQSYLTQLIAKSP
VVDKSVMLPRFPQPQTSQRALPSRVAAMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDR
IASLNGTTVKYVLEQDKAAFVRLIGLSVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHL
LRNYLRNNAFYKVFHMSGNSIDADQRLTRDLEKLTTDLSGLLTGMVKPSVDILWFTWRMK
LLTGQRGVAILYTYMLLGLGFLRRVAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFF
GGGAREKAMVDTKFRALLDHSLMLLRKKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKG
DRALVSTQGELAHALRYLASVVSQSFMAFGDILELHKKFLELSGGVNRIFELDEFLDASQ
SGVTSENQTSRLDSQDLLSFSEVDIITPAQKLMASKLSCEIVSGKSLLVTGPNGSGKTSV
FRVLRDIWPTVCGRLAKPSLDIKELGSGNGIFFIPQRPYTCLGTLRDQIIYPLSKEEAEK
RASKLNSNGESSTDAGSTLDAHLNTILENVRLVYLLERDVGGWDATTNWEDILSLGEQQR
LGMARLFFHRPKFGVLDECTNATSVDVEEQLYRVARDMGVTFITSSQRPALIPFHSVELR
LIDGEGNWELRSIEQTAE
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgccttcactccaattattgcagttaactgagcggggtcggggtcttgtagcctcaaga
cggaaatctatactgcttgcggctgggattgttgctgctggtggagctgctgtttacgta
aaatcaagggttagctctcgaaggcctgattcttcccgtcattgcaatggccagagtgat
gatgatgaggcattggaaaagctgacaggaaatgataaaaaggcaaagataaccacgaca
aagaagaaagggggaggattaaagtctcttcaggttctgactgctattcttctgtctcag
atggggaaaatgggtgccagggatcttttggctctagtggccacagtggttttcagaact
gctttaagcaatagattggcaaaagtacaaggtttcctgttccgtgctgctttcttaagg
cgtgcaccgctgtttctacgtcttatctccgagaatattatgttgtgtttcatgctatcg
acaatgcaatctacatcgaagtacataactggggccttgagtttgcgattcagaaagata
ttgacgaagctaattcattcacattattttgagaatatggtgtattacaaaatatcacat
gtggatggtcggattacacaccccgagcaacgaattgccagtgatgtaccaagattctcc
tcagagttgagcgaacttatacaggatgatttgacagccgttactgatggaattttgtat
gcatggcgcctgtgttcatatgctagtccaaaatatattttctggatattggcctatgta
ctgggggccgggacggcgataaggaacttttctccttcttttgggaaattgatgtccaaa
gaacagcagttggaaggggagtatcgacaacttcattcacgcttaaggacgcattcggaa
agcatagcattctatggtggggaaaccagagaagaatctcatatacaacaaaagttcaag
aatcttgttagccatatgagtcacgtgcttcatgatcactggtggtttggcatgatccaa
gatttcctgctgaagtatcttggtgccacagttgcagttattctgattatcgaaccattc
ttctctgggcatctaagacctgatgactctaccttaggaagagctgagatgctaagcaat
ataagatatcacaccagtgtcattatatctctctttcaggcgctaggaacactttctata
agttccaggcggctcaaccgactcagtggatatgctgaccgaatccatgagttgatggct
gtctcgagagaactcggtggtgatgagaaatcctcgttacagagaaataggagcagaaat
tacctaagtgaagctaactatgttgagttttccggcgtcaaggttgttactccaacgggg
aatgttttggtggaggatctcacccttcgagttgagcaagggtctaatcttctgattaca
ggtcctaatggaagtggcaagagttcccttttccgagtattaggaggtctatggcccctg
gtgtctgggcatattgtgaagccaggagttggttctgatcttaacaaggagatcttctac
gtaccgcaacgaccctatatggcagtaggaacacttcgtgaccagttaatatatcctctt
acttctgatcaagagtctaagcctctcactgagtctggaatggtggagctattgaaaaat
gttgatctagaatatttattggatcgctaccaacctgacaaagaggttaattggggtgat
gaattatctcttggagagcaacagagattggggatggccagattattctaccacaaaccc
aaatttgcaattcttgatgaatgcacaagtgctgtgacaactgatatggaagaacgcttt
gccgctaaggttcgagctatgggaacttcttgcataacaatctcccatcgtccagccctt
gttgcattccatgatgttgttttgtcactagacggtgaagggggatggagtgttcactac
aagagggatgactctgccctactgacggatggtgaaattgattcagcgaaaatttcagat
acagatcggcaaaatgatgcgatggttgttcaacgagcgtttgctgcagctagaaaggaa
tctgctgctactaattcaaagggtcagtcgtacctgacacagttaattgcaaagtcacct
gttgttgataaaagtgtaatgctgcctcgttttcctcaacctcaaacatcccaaagggct
ttaccatcaagagtagctgcaatgttaaacgtattgatacccactatatttgacaaacaa
ggagcacaactgcttgctgttgcttgccttgttgtctcaagaacactgatctctgaccga
atagcctctttgaatgggaccactgtgaagtatgtcttggagcaagataaggcagccttt
gttcgtttgattggtttaagtgttctccaaagtggtgcatcttctatcattgctccttca
ttaaggcatctaacccaaaggctagcgttagggtggagaattcgtttgactcaacatctg
ctacggaattacttgagaaataatgcattttacaaggttttccacatgtcaggcaatagt
attgatgcggaccagagactcactcgtgacctggaaaagttaactactgacttgtctgga
cttcttactggaatggtaaagccatcagttgacattctctggttcacctggaggatgaaa
ctattgactggtcagaggggagttgccatactttacacatatatgttacttggtctgggt
tttctgagacgtgttgctcctgatttcggtgatctagccggtgaagaacagcagcttgaa
gggaaatttaggtttatgcacgaaaggctgaacactcatgctgaatctattgcattcttt
ggaggtggagcccgagaaaaagctatggttgacacaaaatttagggccctgctggaccat
tctctcatgctcttgaggaagaaatggttgtatggaatacttgatgattttgtgacaaag
caacttcccaataatgtgacgtggggattgagtttattgtatgccctagaacacaaggga
gatagagcacttgtctccactcaaggtgaattggcacatgcattgcggtatttagcttct
gttgtctcccaaagctttatggcttttggcgatattcttgaactacacaagaagttcctt
gagctatctggtggtgttaacagaatttttgagcttgatgagtttttggatgcttctcag
tcaggtgttacctcagaaaatcaaacaagtcgtttggattctcaagatctactttccttt
tcggaggtggatatcattacccctgctcagaaattgatggctagcaagttatcatgcgaa
atagtttcagggaaaagcctgctcgtcacaggtccaaatggtagtggaaagacttctgta
tttagagtccttagagatatctggcccactgtatgtggaagacttgccaaaccatcattg
gatatcaaagaacttgggtcagggaatggcatattttttatcccgcagcgaccttataca
tgtttagggacactgagagatcaaattatatatcctctatctaaagaagaggcagagaaa
agggcttcaaagttgaacagcaatggagaaagctcaacagatgctggaagcactctggat
gctcatttgaataccattttggagaatgttcggttagtctatcttttggaaagagatgta
ggtggttgggatgctactaccaattgggaagacatattatctcttggagagcaacagaga
ctaggcatggcacgtttattctttcacagaccgaagtttggagtccttgatgaatgcacc
aatgcgacaagtgttgacgttgaggaacagctctatagggttgcaagagatatgggagtc
actttcataacctcatcacaacggccggctctaatcccgttccactctgtggagttgagg
ctaattgatggagaaggaaactgggagctccgttcgatcgaacaaacagcagagtaa
DBGET
integrated database retrieval system
