Capsella rubella (pink shepherd's-purse): 17896372
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Entry
17896372 CDS
T02984
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17896372
03036 Chromosome and associated proteins [BR:
crb03036
]
17896372
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
17896372
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
17896372
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Tex_N
Spt6_S1
HHH_9
HTH_44
HHH_3
S1
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
17896372
NCBI-ProteinID:
XP_006300644
UniProt:
R0GCS1
LinkDB
All DBs
Position
Unknown
AA seq
1656 aa
AA seq
DB search
MPRNAISDDEDDHELEDEDGEPVHGDPVEHGDDDDEEDDDDVGNEYENDGFIVGDEDEEE
EQEEDEERQDSDEEKQKKKKRRRKKDEDLDEDDYLLLQDNNVKFQKKKYKRLKKAQRERE
NGQGGSSDDEFAGSGGARRSAEDKIKDGLFDDDVDDLPDDVGDEEDLVVEEDVVGSDDDM
ADFIVDEDEGQGLPKRGHSKKNKFRQGSDMNAMRDANEIFGDVDELLTIRKKGLASSERM
ERRLEDEFEPTVLSEKYMTGQDDEIRQLDIPERMQISEESTGSPPVDEISIEEESNWIYA
QLTSLLKESDGQGFHSFEERGFSVNKDDIAKFLELHHVQKLEIPFIAMYRKEQCRSLLDT
ADVDSANQDKKPETKWHKVFWMIQDLDKKWLLLRKRKMALHGYYTKRYEEESRRVYDETR
LNLNQYLFESVIKSLKVAETEREVDDVDSKFNLHFPAGEIGVDEGQYKRPKRKSQYSICS
KAGLWEVANKFGYSAEQLGLALSLEKLVDELEDAKETPEEMAMNFVCAMFEDPQAVLKGA
RHMAAVEISCEPSVKKYVRGIYMENAVVSTSPTADGNTVIDSFHQFSGIKWLREKPLSKF
EGAQWLLIQKAEEEKLLQVTFKLPENHMNRLISDCNEHYLSVGVSKYAQLWNEQRKLILE
DALHTFLLPSMEKEARSLLTSRAKSRLLSEYGQALWKKVSAGPYQKKEMDISSDEEAAPR
VMACCWGPGKPPNTFVMLDSSGEVLDVLYAGSLTIRNQNVNDQQRKKNDQDRVLKFMMDH
QPHVVALGAVNLSCTRLKDDIYEVIFQMVEEKPRDVGHGMDDLSIVYVDESLPRLYENSR
ISGEQLPQQSGIVKRAVALGRYLQNPLAMAATLCGPGREILSWKLHPLEHFLQADEKYGM
VEQVMVDITNQVGIDINLAASHEWFFSPLQFISGLGPRKAASLQRSLVRAGSIFVRKDLI
MHGLGKKVFVNAAGFLRIRRSGLAASSSQFIDLLDDTRIHPESYSLAQELAKDIYDQDVR
GDSNDDEDAIEMAIEHVRDRPGSLRKVVLDEYLASKKRENKKETYSNIMRELSCGFQDWR
IPFKDPSPDEEFYMISGETEDTIAEGRIVQASVRRLQGGRAICVLDSGLTGMLTKEDFSD
DGRDIVELSDRLKEGDILTCKIKSIQKERYQVFLVCKESEMRNNRHQHNQNVDAYYHEDR
NSLQLVKEKARKEKELVRKHFKSRMIVHPRFQNITADQATEYLSDKDFGESIVRPSARGL
NYLTLTLKIYNGVYAHKEIVEGGKENKDITSLQCIGKTLKIGEDTFEDLDEVMDRYVDPL
VSHLKTMLNYRKFRKGTKSEVDDLLKIEKGENPSRIVYCFGISHEHPGTFILSYIRSTNP
HHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPLQESVPSIRSVAAMVPMRSPADRG
SSGGSGWGSSQNEGGWKGNSDRSGSGRGGDYRNGGGRDGHPSGAPRPFGGRGRGRGRGRR
DDMNGDRQDGNGDWGNNDTGTGDGGWGSSGGGGGGWGSESAGKKSGGAGGWGNESGGGST
GGWGSEPADKKSDGAGGWGSGSGGGGGWGNDSGGKKSSEDGGWGNGSGGNASGGKKSSAD
GGWGNESGAKKSDGDGGWGNEPSSRKSDGGGGGGGW
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggaacgcaatttctgacgatgaagatgatcatgagcttgaggatgaggacgga
gagccagttcatggagatcctgtggaacacggtgacgatgatgatgaagaagatgatgat
gacgttgggaatgagtatgagaatgatgggttcatagtgggagatgaagatgaggaagaa
gaacaagaggaggatgaagaaaggcaagatagcgatgaggaaaagcagaaaaagaagaag
aggcgaagaaaaaaggacgaagatcttgatgaagatgattatctgcttctccaagataac
aacgtcaaattccaaaagaagaagtataagcggttgaaaaaagctcaaagggaaagggaa
aatggccaggggggatcatctgatgatgagtttgctggaagtggtggagctagaagaagt
gctgaggataaaatcaaagacgggctgtttgatgatgatgttgatgatctacctgatgat
gtaggcgatgaggaagatttagttgtggaagaagatgtagttgggagtgacgacgacatg
gcagattttattgtagatgaagatgaagggcaaggtctccctaagagggggcactcaaag
aaaaataaatttaggcagggatcagatatgaatgctatgcgagatgctaatgaaatattt
ggtgatgttgatgaacttttgactattcgcaaaaagggtttggcatctagtgaaaggatg
gaaagaaggctcgaagatgagtttgaaccaactgttctctctgagaagtacatgacgggg
caagatgatgaaatccgccagcttgatatccccgagagaatgcagatatctgaagaaagc
actggaagccctcccgtagatgaaattagcattgaggaagagagtaattggatatatgcc
caacttacttctctacttaaagaatctgatggacaaggttttcatagttttgaagagagg
ggtttctcggttaacaaggatgacattgcaaaatttttggagctacatcatgtgcagaaa
ttagagataccgtttatagctatgtatcgaaaggagcaatgccggagcttgttggacact
gctgatgttgatagcgccaatcaagataagaaacctgagactaagtggcataaggtcttc
tggatgattcaggacttggataaaaaatggctccttcttcgaaaaaggaaaatggcgctg
catggatactatacaaaacgttacgaagaagagtctaggagggtctatgatgaaactagg
cttaatctaaatcagtatctttttgaatcagtcattaagtctcttaaagttgcagaaaca
gaaagagaagttgatgatgtagattcgaagttcaacttgcattttcctgctggtgaaatt
ggtgttgatgaagggcaatacaagagaccgaaaagaaaatcacaatatagcatctgcagc
aaagcgggcctctgggaggttgccaacaaatttgggtatagtgctgagcaattgggactt
gcattgtccctggaaaaattggttgatgaacttgaggacgcaaaggaaacaccagaggag
atggcaatgaactttgtgtgtgcaatgtttgaagaccctcaagctgttctgaagggtgca
cggcatatggctgcagttgagataagttgcgagccatctgtcaaaaagtatgtccgtggc
atttatatggagaatgcagtagtctcaacaagtccaacagcagatggaaatacagtaata
gattcattccatcagttttctgggataaagtggttacgtgaaaagccattgagcaagttt
gagggtgcacaatggcttctcattcaaaaggcagaagaggagaaacttcttcaagtaacc
ttcaagctgcctgagaatcacatgaataggctaattagcgactgcaatgaacattatcta
agtgttggtgttagtaagtatgctcaactctggaatgagcaaagaaagttgattctggag
gatgcacttcatacttttcttttgccatcgatggagaaagaagcaagatccttgttgact
agcagagcaaagagtcggttgctttcagagtatggacaggctttgtggaaaaaggtttcc
gcggggccatatcaaaagaaagaaatggacattagctcagatgaggaggctgcacctagg
gtcatggcatgttgttggggacctggaaagccaccaaatacgtttgtgatgctggattca
tcgggagaggtgcttgatgtgctctatgctggatccctcacaatacgaaatcaaaatgtc
aacgaccagcaacgtaaaaagaatgaccaagatcgtgttttaaagtttatgatggaccac
caaccgcatgttgtggctttaggagctgtcaatttgtcttgtactcgtctgaaagatgat
atttatgaggtcatattccagatggtggaggaaaagcctagagatgttggacatggaatg
gatgatttaagcattgtttatgtagatgaatcgcttcctagactatatgaaaattctcga
atctcgggtgaacagctacctcagcagtcagggatcgtgaaacgtgcggttgctcttgga
cgctatctccaaaatccactagcaatggctgctactttatgcggtccaggtagggaaatt
ttgtcttggaagcttcatcccttagagcattttcttcaggcagacgagaagtatggaatg
gttgagcaggttatggttgacataacaaaccaggttggaatcgacattaatttggcagct
agccatgagtggtttttttcccctttacagttcatttctggacttgggcctaggaaagct
gcatcattgcagaggtcgcttgtaagagctggttcaatatttgttcgcaaggacctgata
atgcatgggcttggtaaaaaggtttttgtaaatgcagccggttttttgcgcattcgcagg
agtggactggctgctagtagcagtcagtttattgacttattggatgacacccgaatacat
cccgagtcatatagtcttgcccaagaattagctaaagatatttatgatcaagatgtcaga
ggtgactcaaatgatgatgaggatgcaatagagatggcaatagagcatgtgagagatcgt
ccaggctctttgagaaaagtggtccttgatgagtatcttgccagcaagaaaagggagaat
aagaaggaaacctatagtaatatcatgagagaattaagctgtggtttccaggattggcgg
ataccgtttaaagacccaagtccagatgaagaattttatatgatttcaggtgaaactgaa
gacaccatagctgagggaagaattgtgcaggctagtgttcggagattacagggtggaaga
gccatatgtgtattagattctgggttaactgggatgcttacgaaggaagatttctcagat
gatgggagagatattgttgagttatcggaccgactgaaagaaggcgatatcctgacatgc
aagatcaaatcgattcaaaaggagaggtatcaggtgttccttgtttgcaaagaaagtgaa
atgagaaacaacagacaccagcataaccagaatgtggatgcctattatcatgaggataga
aacagtctccagcttgtaaaagagaaagctcgaaaggaaaaagagctagtgagaaagcat
tttaagtctcggatgattgtccatcctcgctttcagaatatcactgcggaccaagcaaca
gagtatttgtctgacaaagactttggagaaagcattgttcgtccaagtgctcgaggactc
aattatttaactttgacgctcaagatttataatggagtttacgctcacaaagagatagtt
gaaggtgggaaagaaaacaaggacatcactagcctacagtgtattgggaaaacccttaaa
attggagaggacaccttcgaagatctagatgaggtgatggatcgatatgttgatcctttg
gtatctcatcttaagacaatgctcaactatcggaaattccgaaaggggaccaaatcagaa
gttgatgatcttcttaagatcgagaagggcgaaaatccttcaagaatagtttactgcttc
gggatttctcatgaacatccaggcacctttatactatcttatataaggagtacaaatcca
catcatgagtatataggcctatatcctaagggatttaagttcaggaaaaggatgtttgag
gacattgataggcttgtggcatacttccagaggcatattgatgacccattgcaggagtca
gtgccatcaatccggtctgttgctgccatggtaccgatgagaagcccagctgaccgtggc
tcatctgggggaagtggttggggtagttctcagaatgaaggaggctggaaaggaaactca
gatcgctcaggctcagggaggggtggtgattacagaaatggtggtggacgtgatggccat
ccaagtggagcgccaaggccatttggtggtcgcggtcgtggtcgaggcagaggacgaaga
gatgatatgaacggtgatagacaagatggaaatggagattggggtaataatgatactgga
actggagatggaggttggggaagtagtggtggtggcggtggcggttggggaagcgagtct
gctggtaaaaagagcggtggtgcaggtggctggggtaatgagtctggtggtggcagtact
ggtggttggggaagcgagcctgctgacaaaaagagtgatggtgcgggcggctggggtagt
ggatccggtggtggcggaggttggggaaatgattctggcggtaaaaagagcagtgaggat
ggtggttggggaaatggttctggcggaaacgcatctggtggtaaaaagagcagtgcagat
ggcggttggggaaacgagtctggtgctaaaaagagcgacggagatggcggttgggggaat
gaacccagcagtcgaaagagcgatggcggcggcggtggtggtggatggtga
DBGET
integrated database retrieval system
