Chlamydomonas reinhardtii: CHLRE_02g092500v5 Help Entry CHLRE_02g092500v5 CDS       T01039                                  Name (RefSeq) uncharacterized protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism cre  Chlamydomonas reinhardtii Pathway cre03013   Nucleocytoplasmic transport cre03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cre00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     CHLRE_02g092500v5    03015 mRNA surveillance pathway     CHLRE_02g092500v5  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cre03019]     CHLRE_02g092500v5 Enzymes [BR:cre01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      CHLRE_02g092500v5     5.6.2.5  RNA 5'-3' helicase      CHLRE_02g092500v5 Messenger RNA biogenesis [BR:cre03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      CHLRE_02g092500v5    mRNA cycle factors     Common to processing body (P body) and stress granule      CHLRE_02g092500v5 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD Viral_helicase1 SLFN-g3_helicase UvrD-helicase nSTAND3 ATPase AAA_22 Helicase_RecD AAA_16 PhoH SRP54 Ribosomal_S13_N AAA Motif Other DBs NCBI-GeneID:  5727501 NCBI-ProteinID:  XP_042927088 LinkDB All DBs Position 2:2529358..2538239 Genome browser AA seq 1199 aa AA seqDB search MTQPFPTQASDFNFSFAEPGGGLTFQDYGATQDVHPGTLQFNDFTQGVSQALNWGAPVGV TAASQRLAQQQVHQSAFDAPLDGLTAGFQQQLRFQETFDEEAEEEQPPAEPEKTPEWACS YCGIHNPSCVVKCLSTNKWFCNGRVHGTGSCIILHLVKSKNKEVQLHRDSPLGDTVLECY ASGTRNLFVLGFVPVKSENTVVLLARDTPPNHPTIRDLNLDLSQWQPIVEDRGLVPWLVK QPTEPELLRARHLKLDQINKLEEMWKTKPAAGVDDLDEKATVEGDGVTQPVTLKYEDSAQ YQAVFEPLVKLEADYDRSIKESQSRDDITLRWDWGLNAKRVAYFYFPRDDNELKLMQGDE LKLRHKNASNRGAWEALGHVLTYQQSEEVCLELFTNDVPEDCTVGFSVDFVWRGTSFDRM RNALNTFRKYSASISGYLYHLILGHPVESVTLKIPLPKAGLGVPSLPELNHSQLHAVKSV LQQPLSLIQGPPGTGKTVTSAAIVYHLAHSGTGQVLVAAPSNVAVDQLAHKMDQTGLKVV RLCAKTREAVASPVEHLTLHYQVTHMAVPEGERLRKLLALRGAQGGLNASDEKELKSLRR RLEMEVLENADVVCTTCVGAGDPRLSHFRFQHVLIDESTQAAEPECLIPMVLGAKQVILV GDHCQLGPVIMCKKAAEAGLCQSLFERLRLLGVKPIRLQVQYRMHPCLSEFPSNTFYEGT LQNGTGMGERRLAGVDFPWPNPDKPMMFWVQLGAEEISASSTSYLNRTEAAAVEKVVTRF LQNGMSPAQIGVITPYEGQRAHVVSVMVRNGTARQDLYKEIEVSSVDAFQGREKDIIVLS CVRSNEHSSIGFLSDPRRLNVALTRARFGLVVLGNPRVLSRQPLWNSLLQYFKEHGCLAE GPLTNLKASMVQLHKPKRVFDRMSFGVGALTTNRFQPPEKVGDPLPPKASPGYGPVGAGA PGAGAPSGQQLQFAAVPPTGGAAAAGGSGAAANGGGNRYSSRAATGGMAGRGSGAAGGAA TAAAVAAAAGRAGASQTFMPFAAPTYSIPAPTARGKGPRGDATASQAASDLSLPGVYTQP AAVAGGTTQGTLPATQAITGLGGASQLAGGAAAAALPYGFTADFSQTSGYGGLGAAGVGM GMGVGTLGGLPGLGLGGDVDFNSQVDNFLLSQGFGNETQFLDAATGEFLGGFGGATQDR NT seq 3600 nt NT seq  +upstreamnt  +downstreamnt atgacacagccgtttccaactcaagccagtgactttaacttcagcttcgctgagccaggc ggcgggcttacgttccaggactatggggcgacgcaagatgtgcaccctggcacgctgcag ttcaacgacttcacgcagggcgtcagtcaagctctcaactggggcgcacctgttggcgta acggctgcctctcagaggctcgcacagcagcaggtgcaccagtctgcgttcgatgctccc cttgatgggctcacagcgggcttccagcagcaactgcggttccaggagacgttcgatgag gaggctgaggaggagcagccgcccgctgagccggagaagacgcccgagtgggcttgctct tactgcggcatccacaaccccagctgcgtggtcaagtgcctgagcaccaacaagtggttc tgcaacggccgcgtgcacggcaccggctcgtgcatcatcctgcacctggtcaagagcaag aacaaggaggtgcagctgcaccgggactcgccgctgggcgacaccgtgcttgagtgctat gccagcggcacgcgcaacctgttcgtgctggggttcgtgccggtcaagagcgagaacacg gtggtgctgctggcgcgagacacgccgcccaaccaccccaccatccgcgacctcaatctc gacctgtcgcagtggcagccgattgtggaggaccgcggcctggtgccctggctggtgaag cagcctacagagccggagctgctgcgggcgaggcacctcaagctggaccagatcaacaag ctggaggagatgtggaagaccaagccggcggcgggtgtggacgatctggatgagaaggcg acggtggagggggacggcgtgacgcagccagtgacgctcaagtacgaggactcggcgcag taccaggccgtgtttgagccgctggtgaagctggaggccgactatgaccgctccatcaag gagagccagagccgcgatgacatcacgctgcggtgggactggggcctcaacgccaagcgc gtggcgtacttctacttcccgcgcgacgacaacgagctcaaactcatgcagggtgatgag ctgaagctgcgtcacaagaacgcgagcaaccgcggggcgtgggaggcgctgggccatgtg ctcacataccagcagagcgaggaggtgtgcctggagttgttcacaaacgatgtgcccgag gactgcactgtcggcttcagtgtggactttgtgtggcgcggcaccagctttgaccgcatg cgcaacgcgctcaacaccttccgcaagtactccgcatccatttcgggctacctgtaccac ctcattctgggccacccggtggagtccgtgacgctcaagatcccgctgcccaaggccggt ctgggcgtgccctcgctgcccgagctcaaccacagccagctgcacgccgtcaagtccgtg ctgcagcagccgctgtcgctcatccagggccctcccggcacgggcaagacggtgaccagt gcggccatcgtgtaccacctggcgcacagcggcacgggccaggtgctggtggcggcgccc tccaacgtggcggtggaccagctggcgcacaagatggaccagaccgggctcaaggtggtg cgcctgtgcgccaagacgcgcgaggcggtggcgtcgccggtggagcacctcacgctgcac tatcaggtgacgcacatggctgtgcctgagggcgagcggctgcgcaagctgctggcgctg cggggcgcgcagggcggcctgaacgccagcgacgagaaggagctcaagagcctgcggcgg cggctggagatggaggtgctggagaacgccgacgtggtgtgcaccacatgcgtgggcgca ggcgacccgcgcctgtcgcacttccgtttccagcacgtgctaattgacgagagcacccag gccgcggagccggagtgcctcattcccatggtgctgggagccaagcaggtgatcctggtg ggcgaccactgccagctgggtccggtcatcatgtgcaaaaaggcggcggaggcggggctg tgccagtcgctgttcgagcgcctgcgcctgctgggcgtcaagccgatccgcctgcaggtc cagtaccggatgcacccctgcctgtcggagttcccctccaacaccttctacgagggcacg ctgcagaacggcacgggcatgggcgagcggcggctggcgggcgtggacttcccctggccc aaccccgacaagcccatgatgttctgggtgcagctgggcgcggaggagatcagcgccagc agcacctcgtacctgaaccgcacggaggcggcggcagtggagaaggtggtgacgcgcttc ctgcagaacggcatgagcccggcccagattggcgtcatcacgccgtacgagggccagcgc gcgcacgtggtgtcggtcatggtgcgcaacggcacggcccggcaggacctgtacaaggag attgaggtgtcgagtgtggacgcgttccaaggccgcgagaaggacatcatcgtgctgtcg tgcgtgcgctccaatgagcactcctccatcggctttctgtccgacccgcgccgcctcaac gtggcgctcacccgtgcgcgcttcggcctggtggtgctgggcaacccgcgcgtgctgtcg cgccagccgctgtggaacagcttgctgcagtacttcaaggagcacggctgcctggcggag gggccgctcacaaacctcaaagcctccatggtgcagctgcacaagcccaagcgggtgttt gaccgcatgtcgttcggggtgggtgcactcaccaccaaccgcttccagccgcccgagaag gtcggcgacccactgccgcccaaggcctcgcctggatacggccccgtgggcgccggcgcg ccaggcgccggcgcgccttcggggcagcagctgcagtttgcagctgtgccgcccaccggc ggcgcggcagcggcgggtggcagtggcgcggctgcgaacggcggcggcaaccggtattca tcacgtgccgctaccggaggcatggcagggcgcggcagcggtgctgcgggcggggccgcg actgcggcggcggtggccgcggcagcgggccgggctggcgcgagccagacgtttatgccc ttcgctgcgcccacatacagcattcccgcgcctacggcgcgaggcaaggggccgcgcggc gacgcgacggcttcccaggccgccagcgacctgtccctgcccggcgtctacacgcagccc gccgcggtggcaggcggcaccacgcagggcaccctgcccgccacacaggccataacgggc ctaggcggggcctcgcagctggccggcggcgcagccgcggccgcgctgccgtacggcttc accgccgacttcagccagaccagtggctacggtggcttgggggcggcgggcgtgggcatg ggcatgggcgtgggcacgctgggcgggctgccgggcctgggcctgggcggtgatgtggac ttcaacagccaggtggataacttcctgctgagccaaggcttcggcaacgagacgcagttc ctggatgcggccactggcgagttcctgggcggcttcggcggcgcgacgcaggaccgatga

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